View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12928_low_16 (Length: 368)

Name: NF12928_low_16
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12928_low_16
NF12928_low_16
[»] chr5 (12 HSPs)
chr5 (6-348)||(1162348-1162690)
chr5 (110-246)||(1850468-1850604)
chr5 (20-327)||(40412480-40412778)
chr5 (191-268)||(40419467-40419544)
chr5 (47-106)||(1850781-1850840)
chr5 (20-160)||(39880558-39880689)
chr5 (270-348)||(39400904-39400982)
chr5 (121-314)||(38988459-38988658)
chr5 (6-58)||(40419663-40419715)
chr5 (302-348)||(40419414-40419460)
chr5 (6-42)||(3300186-3300222)
chr5 (6-42)||(3393079-3393115)
[»] chr4 (1 HSPs)
chr4 (145-265)||(25911041-25911161)
[»] chr8 (1 HSPs)
chr8 (156-246)||(34401891-34401981)


Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 348
Target Start/End: Original strand, 1162348 - 1162690
Alignment:
Q  6 agtgagaagaagtaaaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggatt 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162348 agtgaaaagaagtaaaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggatt 1162447  T
Q  106 gcatagagagattgagaaggggtttgagacaataattttcaagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgt 205  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162448 gtatagagagattgagaaggggtttgagacaataattttcaagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgt 1162547  T
Q  206 cgtataaatgcaatcagcaaattcagcaatctcataattgacagacaaatgtatcatgagaaaaacaagttgcttatcttaaagagattcttcgcggcca 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1162548 cgtataaatgcaatcagcaaattcagcaatctcataattgacagacaaatgtatcatgagaaaaacaagttgtttatcttaaagagattcttcgcggcca 1162647  T
Q  306 ggaactagttcctttataaaatgcacaaactgcttttgagcat 348  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1162648 ggaactagttcctttataaaatgcacaaactgcttttgagcat 1162690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 110 - 246
Target Start/End: Complemental strand, 1850604 - 1850468
Alignment:
Q  110 agagagattgagaaggggtttgagacaataattttcaagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcgta 209  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  1850604 agagagattgcgaaggggtttgagacaataattttcaagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcatc 1850505  T
Q  210 taaatgcaatcagcaaattcagcaatctcataattga 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  1850504 taaatgcaatcagcaaattcagcaatctcataattga 1850468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 40412778 - 40412480
Alignment:
Q  20 aaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattgcatagagagattg 119  Q
    ||||||||||||||||| |||||||||||||||||||||    |||||||||||||||| |||||||||||||||||||     ||   || |     ||    
T  40412778 aaactagccatgtttgaatgcaagagttgtataaaccag----ttttgctgcaaaatctacatccctaaggctttgaga-----tt---taaacc---tg 40412694  T
Q  120 agaaggggtttgagacaataattttcaagctcgtgttgtaa-------caacttgagtagcctataatgatat------aactgaacatctcaaaatgtc 206  Q
    ||| ||||||| |||||||||||||||||||| ||||||||       |||||| | ||||||||||||||||      ||||||||| |||| ||| ||    
T  40412693 aga-ggggtttaagacaataattttcaagctcatgttgtaagttgcaacaacttcaatagcctataatgatattgatataactgaacacctcagaatatc 40412595  T
Q  207 gtataaatgcaatcagcaaattcagcaatctcataattgacagacaaatgtatcatgagaaaaa-caagttgcttatctt--aaagagattcttcgcggc 303  Q
     ||||| || |||||||||         ||||||||||||  |||||||||||||  ||||||| |||||||||||||||  |||||||||||| |  ||    
T  40412594 atataattgtaatcagcaa---------tctcataattgatggacaaatgtatcacaagaaaaaacaagttgcttatcttttaaagagattcttagtagc 40412504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 191 - 268
Target Start/End: Complemental strand, 40419544 - 40419467
Alignment:
Q  191 aacatctcaaaatgtcgtataaatgcaatcagcaaattcagcaatctcataattgacagacaaatgtatcatgagaaa 268  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  40419544 aacacctcaaaatgtcgtataattgcaatcagcaaattcagcaatctcataattgatggacaaatgtatcatgagaaa 40419467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 1850840 - 1850781
Alignment:
Q  47 tgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850840 tgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattg 1850781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 39880689 - 39880558
Alignment:
Q  20 aaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattgcatagagagattg 119  Q
    ||||||||||||||||| |||||||||||||||||||||    |||||||||||||||| |||||||||||||||||     ||||  |    |||||||    
T  39880689 aaactagccatgtttgaatgcaagagttgtataaaccag----ttttgctgcaaaatctacatccctaaggctttga-----gatttaaacctgagattg 39880599  T
Q  120 agaaggggtttgagacaataattttcaagctcgtgttgtaa 160  Q
     |||||||||| |||||||||||||||||||| ||||||||    
T  39880598 tgaaggggtttaagacaataattttcaagctcatgttgtaa 39880558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 348
Target Start/End: Complemental strand, 39400982 - 39400904
Alignment:
Q  270 acaagttgcttatcttaaagagattcttcgcggccaggaactagttcctttataaaatgcacaaactgcttttgagcat 348  Q
    |||||||| |||||||||| |||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||    
T  39400982 acaagttggttatcttaaaaagattctttgcagccaggaactagttcctttataaaatacacaaactacttttgagcat 39400904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 314
Target Start/End: Complemental strand, 38988658 - 38988459
Alignment:
Q  121 gaaggggtttgagacaataattttcaagctcgtgttgtaa-------caacttgagtagcctataatgatat------aactgaacatctcaaaatgtcg 207  Q
    |||||||||| |||||||||| ||||||||| ||||||||       |||||| | ||||||||||||||||      ||||||||| |||| ||||||     
T  38988658 gaaggggtttaagacaataatgttcaagctcatgttgtaagttgtaacaacttcaatagcctataatgatattgatataactgaacacctcataatgtca 38988559  T
Q  208 tataaatgcaatcagcaaattcagcaatctcataattgacagacaaatgtatcatgagaaaaacaagttgcttatc--ttaaagagattcttcgcggcca 305  Q
    ||||| |||||||||||          ||||||||||||  |||||||||||||  ||||||||||||||||||||  ||||||||||||||||  ||||    
T  38988558 tataattgcaatcagcat---------tctcataattgatggacaaatgtatcacaagaaaaacaagttgcttatcttttaaagagattcttcgtagcca 38988468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 40419715 - 40419663
Alignment:
Q  6 agtgagaagaagtaaaactagccatgtttgattgcaagagttgtataaaccag 58  Q
    ||||| ||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  40419715 agtgaaaagaagtaaaactagccatatttgagtgcaagagttatataaaccag 40419663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 40419460 - 40419414
Alignment:
Q  302 gccaggaactagttcctttataaaatgcacaaactgcttttgagcat 348  Q
    |||| ||||||||||||||||| |||||||||||| |||||||||||    
T  40419460 gccaagaactagttcctttatacaatgcacaaactacttttgagcat 40419414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 3300222 - 3300186
Alignment:
Q  6 agtgagaagaagtaaaactagccatgtttgattgcaa 42  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  3300222 agtgaaaagaagtaaaactagccatgtttgagtgcaa 3300186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 3393115 - 3393079
Alignment:
Q  6 agtgagaagaagtaaaactagccatgtttgattgcaa 42  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  3393115 agtgaaaagaagtaaaactagccatgtttgagtgcaa 3393079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 25911041 - 25911161
Alignment:
Q  145 caagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcgtataaatgcaatcagcaaattcagcaatctcataatt 244  Q
    ||||||| || ||||||||||| ||||||||||||| ||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||    
T  25911041 caagctcatggtgtaacaacttcagtagcctataataatataactgaacacctcaaaatatcatataattgcaatcagcaaattcagcaatctcataatt 25911140  T
Q  245 gacagacaaatgtatcatgag 265  Q
    ||  |||||||||||||||||    
T  25911141 gatggacaaatgtatcatgag 25911161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 34401981 - 34401891
Alignment:
Q  156 tgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcgtataaatgcaatcagcaaattcagcaatctcataattga 246  Q
    ||||||||||| ||||||||||||| ||||||||||||  ||||||||||| ||||| || ||||||||| |||| | |||||||||||||    
T  34401981 tgtaacaacttcagtagcctataataatataactgaactcctcaaaatgtcatataattgaaatcagcaatttcacccatctcataattga 34401891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University