View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12928_low_17 (Length: 347)

Name: NF12928_low_17
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12928_low_17
NF12928_low_17
[»] chr2 (1 HSPs)
chr2 (1-279)||(45401949-45402227)
[»] chr5 (1 HSPs)
chr5 (1-279)||(19611098-19611375)
[»] chr3 (3 HSPs)
chr3 (1-279)||(23361533-23361814)
chr3 (53-127)||(28696533-28696607)
chr3 (12-52)||(47351506-47351546)
[»] chr6 (1 HSPs)
chr6 (1-279)||(7599853-7600129)
[»] chr4 (4 HSPs)
chr4 (1-279)||(28462394-28462669)
chr4 (53-127)||(54188531-54188605)
chr4 (53-127)||(8570573-8570647)
chr4 (72-113)||(2550273-2550314)
[»] chr8 (2 HSPs)
chr8 (3-62)||(8835774-8835833)
chr8 (70-117)||(23241019-23241066)
[»] chr7 (3 HSPs)
chr7 (72-130)||(7710913-7710971)
chr7 (53-127)||(3367619-3367693)
chr7 (72-121)||(22884134-22884183)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 45402227 - 45401949
Alignment:
Q  1 tctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttcattgagacaatttatcaaacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45402227 tctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttcattgagacaatttatcaaacac 45402128  T
Q  101 ctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgttgtcttttggtagctagagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45402127 ctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgctgtcttttggtagctagagc 45402028  T
Q  201 tgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggtttccgaaaaagatgaatgctaagcttc 279  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||||||||    
T  45402027 tgcaatccgaagattgatatcgttgaattcttgatggttggacactggtggttaccgaaatcgatgattgctaagcttc 45401949  T

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Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 19611375 - 19611098
Alignment:
Q  1 tctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttcattgagacaatttatcaaacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19611375 tctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaaaaattgcaaaacaggttcaaatttcattgagacaatttatcaaacac 19611276  T
Q  101 ctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgttgtcttttggtagctagagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  19611275 ctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgctgtcttttgatagctagagc 19611176  T
Q  201 tgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggtttccgaaaaagatgaatgctaagcttc 279  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||  ||||| || ||||||||    
T  19611175 tgcaatccgaagatcgatatcgttgaattgttgat-gttggacattggcggttgccgaaatcgatgattgttaagcttc 19611098  T

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Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 23361814 - 23361533
Alignment:
Q  1 tctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttcattgagacaatttatcaaacac 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23361814 tctgaaatcgtatccaacactgaaacctcaaccaacaccaaaacctgcaaaaataattgcaaaacaggttcaaatttcattgagacaatttatcaaacac 23361715  T
Q  101 ctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgttgtcttttggtagctagagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23361714 ctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgctgtcttttggtagctagagc 23361615  T
Q  201 tgcaatccgaagatcgatatcgttgaattgttgatggttggaca---ctggcggtttccgaaaaagatgaatgctaagcttc 279  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||   ||||||||| ||||||  ||||| |||||||||||    
T  23361614 tgcaatctgaagatcgatatcgttgaattattgatggttggacactgctggcggttgccgaaatcgatgattgctaagcttc 23361533  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 28696607 - 28696533
Alignment:
Q  53 acaattgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc 127  Q
    ||||||||||||||   ||||||||||||| | ||| ||||| |||||||  || ||| ||||||||||||||||    
T  28696607 acaattgcaaaacatagtcaaatttcattgcgtcaaattatcgaacacctgataggcagcacaataataccttgc 28696533  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 47351546 - 47351506
Alignment:
Q  12 atccaacaccgaaacctcaaccaacaccaaaacctgcaaaa 52  Q
    |||||||||| ||||| ||||||||||| ||||||||||||    
T  47351546 atccaacaccaaaaccgcaaccaacaccgaaacctgcaaaa 47351506  T

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Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 7600129 - 7599853
Alignment:
Q  1 tctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttcattgagacaatttatcaaacac 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7600129 tctgaaatcgtatccaacacagaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttcattgagacaatttatcaaacac 7600030  T
Q  101 ctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgttgtcttttggtagctagagc 200  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||  ||||||||||| || |||||||||||||||||    
T  7600029 ctcctatgcaacacaataataccttggaagaaaaaacttcactgtcaaatttcacaataatacaac--gggaaacaatgctgccttttggtagctagagc 7599932  T
Q  201 tgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggtttccgaaaaagatgaatgctaagcttc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||||||||    
T  7599931 tgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttc 7599853  T

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Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 28462394 - 28462669
Alignment:
Q  1 tctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttcattgagacaatttatcaaacac 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28462394 tctgaaatcgtatccaacacagaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttcattgagacaatttatcaaacac 28462493  T
Q  101 ctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaatgttgtcttttggtagctagagc 200  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||  ||||||||||| || |||||||||||||||||    
T  28462494 ctcctatgcaacacaataataccttggaaga-aaaacttcactgtcaaatttcacaataatacaac--gggaaacaatgctgccttttggtagctagagc 28462590  T
Q  201 tgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggtttccgaaaaagatgaatgctaagcttc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||||||||    
T  28462591 tgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagcttc 28462669  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 54188531 - 54188605
Alignment:
Q  53 acaattgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc 127  Q
    ||||||||||||||   ||||||||||||||| ||| ||||| |||||||  || ||| ||||||||||||||||    
T  54188531 acaattgcaaaacacagtcaaatttcattgagtcaaattatcgaacacctgataggcagcacaataataccttgc 54188605  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 8570647 - 8570573
Alignment:
Q  53 acaattgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc 127  Q
    ||||||||||||||   ||||||||||||| | ||| ||||| |||||||  || ||| ||||||||||||||||    
T  8570647 acaattgcaaaacatagtcaaatttcattgcgtcaaattatcgaacacctgataggcagcacaataataccttgc 8570573  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 2550273 - 2550314
Alignment:
Q  72 aaatttcattgagacaatttatcaaacacctcctatgcaaca 113  Q
    ||||||||||||| ||| |||||||||||||| |||||||||    
T  2550273 aaatttcattgagtcaaattatcaaacacctcatatgcaaca 2550314  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 8835774 - 8835833
Alignment:
Q  3 tgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaa 62  Q
    |||||||  ||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  8835774 tgaaatcccatccaacaccgaaacctcaaccaacacaaaaaactgcaaaaacaattgcaa 8835833  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 23241066 - 23241019
Alignment:
Q  70 tcaaatttcattgagacaatttatcaaacacctcctatgcaacacaat 117  Q
    ||||||||||||||| ||| ||||||||||| || |||||||||||||    
T  23241066 tcaaatttcattgagtcaaattatcaaacacttcatatgcaacacaat 23241019  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 7710971 - 7710913
Alignment:
Q  72 aaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgcaag 130  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||    
T  7710971 aaatttcattgagtcaaattatcaaacacctcatatgcaacacaatcataccttgcaag 7710913  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 3367619 - 3367693
Alignment:
Q  53 acaattgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc 127  Q
    ||||||||||||||   ||||||||||||||| ||| |||||||||||||  || ||| ||||||||||||||||    
T  3367619 acaattgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttgc 3367693  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 22884183 - 22884134
Alignment:
Q  72 aaatttcattgagacaatttatcaaacacctcctatgcaacacaataata 121  Q
    ||||||||||||| ||| ||||||||||||||  | ||||||||||||||    
T  22884183 aaatttcattgagtcaaattatcaaacacctcacacgcaacacaataata 22884134  T

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