View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12928_low_18 (Length: 336)
Name: NF12928_low_18
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_low_18 |
 | |
|
| [»] scaffold0376 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 20478254 - 20478564
Alignment:
| Q |
9 |
gaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478254 |
gaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggtcacgacccttaatgtcgggtttatcaattgttatttggc |
20478353 |
T |
|
| Q |
109 |
ggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20478354 |
ggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtaggtccaaaaccatccat |
20478453 |
T |
|
| Q |
209 |
ctccaccaacaattgatttaaagtactttcacgctcatcatttgcagcacctccgcctctactactccttgcccgaccaattgcatcaatttcatcgata |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478454 |
ctccaccaacaattgatttaaagtactttcacgctcatcatttgcagcacctccgcctctactactccttgcccgaccaattgcatcaatttcatcgata |
20478553 |
T |
|
| Q |
309 |
aatactatact |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
20478554 |
aatactatact |
20478564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 38513735 - 38514045
Alignment:
| Q |
9 |
gaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggc |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
38513735 |
gaataatatgaaggctcgtggtcaagtttgatccctttcaagtaaatctgaaatatctggtcacgacctttgatgtcaggtttatcaattgttatttggc |
38513834 |
T |
|
| Q |
109 |
ggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccat |
208 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
38513835 |
ggtcaaaacgccccggtctaagtagggctttgtctaatacatcaggtctatttgtacctgccagcacaacaactccagcagtggttccaaaaccatccat |
38513934 |
T |
|
| Q |
209 |
ctccaccaacaattgatttaaagtactttcacgctcatcatttgcagcacctccgcctctactactccttgcccgaccaattgcatcaatttcatcgata |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
38513935 |
ctccaccaacaattgatttaaagtactttcacgttcatcatttgcacgatctccgcctctactaccccttgcccgaccaattgcatcaatttcatcaata |
38514034 |
T |
|
| Q |
309 |
aatactatact |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
38514035 |
aatactatact |
38514045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 32 - 319
Target Start/End: Complemental strand, 29728660 - 29728373
Alignment:
| Q |
32 |
aagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagt |
131 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||| || || || |
|
|
| T |
29728660 |
aagtttgatcttgttcaagtaaatctgaaatatctggtcacgacctttgatgtcgggtttatcaactgttatttggcgatcgaaacgcccaggcctgagc |
29728561 |
T |
|
| Q |
132 |
aaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaag |
231 |
Q |
| |
|
| ||||| ||||||| |||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29728560 |
agagctttatctaatatatcaggtctattcgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatctccaccaacaattgatttaaag |
29728461 |
T |
|
| Q |
232 |
tactttcacgctcatcatttgcagcacctccgcctctactactccttgcccgaccaattgcatcaatttcatcgataaatactatact |
319 |
Q |
| |
|
||| |||||||||||||||| || | |||| |||||| ||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29728460 |
tacgatcacgctcatcatttgaaggagagtaacctccactacttcttgctcgaccaattgcatcaatttcatcaataaatactatact |
29728373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 24004280 - 24003969
Alignment:
| Q |
9 |
gaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggc |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||| ||| || |
|
|
| T |
24004280 |
gaataatatgaaggctcgtggtcaagtttgatttttttcaaataaatctgaaatatctggtcacgacctttaatgtcgggtacatcaattgatatcgtgc |
24004181 |
T |
|
| Q |
109 |
ggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccat |
208 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||||||| ||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
24004180 |
ggtcaaaacgcccaggcctaagtaaggcgttgtctaatatatcagctctatttgtacctgcaagcacaacaactccagcagtggttccaaaaccatccat |
24004081 |
T |
|
| Q |
209 |
ctccaccaacaattgatttaaagtactttcacgctcatcatttgcagcacctccgcctctactactccttgcccgaccaattgcatcaatttcatcgata |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | || |||| || || |||| |||||||||||||||||| ||||| ||| |
|
|
| T |
24004080 |
ttccaccaacaattgatttaaagtactttcacgctcatcatttgaaccagagaaacctccacgaccccttttccgaccaattgcatcaatctcatcaata |
24003981 |
T |
|
| Q |
309 |
aatactatactg |
320 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24003980 |
aatactatactg |
24003969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 3206 - 2900
Alignment:
| Q |
9 |
gaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggc |
108 |
Q |
| |
|
||||||||||||||||| | |||||||||||| || ||||||||||| ||||||||||| | ||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
3206 |
gaataatatgaaggctcattgtcaagtttgattctgttcaagtaaatttgaaatatctgatcgcgacctttgatgtcgggtttgtcaattgttatttggc |
3107 |
T |
|
| Q |
109 |
ggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccat |
208 |
Q |
| |
|
||||||||||||| ||||||| || |||||||||||||||||||| |||||||||||| || ||||| |||||||||| ||| |||||||| |||||||| |
|
|
| T |
3106 |
ggtcaaaacgccctggtctaactagggctttgtctaatacatcagctctatttgtaccagctagcacaacaactccagaagtggttccaaatccatccat |
3007 |
T |
|
| Q |
209 |
ctccaccaacaattgatttaaagtactttcacgctcatcatttgcagcacctccgcctctactactccttgcccgaccaattgcatcaatttcatcgata |
308 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| || | | || | ||||||| ||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
3006 |
ctccaccaacaattgatttaaagtattttcacgctcctcgtgtacataatatccgcct---gtaccccttgcccgaccaattgcatcaatttcatcaata |
2910 |
T |
|
| Q |
309 |
aatactatac |
318 |
Q |
| |
|
|||||||||| |
|
|
| T |
2909 |
aatactatac |
2900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 32 - 319
Target Start/End: Complemental strand, 16838135 - 16837848
Alignment:
| Q |
32 |
aagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagt |
131 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| || |||||||| | || || |
|
|
| T |
16838135 |
aagtttgatcttgttcaagtaaatctgaaatatctggtcacgacctttgatgtcgggtttatcagctgttatttggcgatcgaaacgcccatgcctgagc |
16838036 |
T |
|
| Q |
132 |
aaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaag |
231 |
Q |
| |
|
| ||||| ||||||| |||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16838035 |
agagctttatctaatatatcaggtctattcgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatctccaccaacaattgatttaaag |
16837936 |
T |
|
| Q |
232 |
tactttcacgctcatcatttgcagcacctccgcctctactactccttgcccgaccaattgcatcaatttcatcgataaatactatact |
319 |
Q |
| |
|
||| ||||||||||||||||| | || ||| |||||| ||||| |||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
16837935 |
tacgttcacgctcatcatttgaaccagagtaaccttcactacttcttgctcgaccaatggcatcaatttcatcaataaatactatact |
16837848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 45284926 - 45284835
Alignment:
| Q |
97 |
ttgttatttggcggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagca |
188 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
45284926 |
ttgttatttggaggtcaaaacgccccggcctaagtagggctttgtctaatacatcaggtctattggtacctgccagcacaacaactccagca |
45284835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 45284974 - 45284926
Alignment:
| Q |
9 |
gaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatct |
57 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45284974 |
gaataatatgaaggctcctggtcaagtttaatccttttcaagtaaatct |
45284926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 45284842 - 45284771
Alignment:
| Q |
209 |
ctccaccaacaattgatttaaagtactttcacgctcatcatttgcagcacctccgcctctactactccttgc |
280 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||| ||| || ||||||| || |||||| |
|
|
| T |
45284842 |
ctccagcaacaattgatttaaagtactttcaccctcatcatttgcacgaccaccacctctaccaccccttgc |
45284771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University