View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12928_low_19 (Length: 302)

Name: NF12928_low_19
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12928_low_19
NF12928_low_19
[»] chr6 (12 HSPs)
chr6 (19-301)||(29143027-29143310)
chr6 (218-301)||(25516899-25516982)
chr6 (40-126)||(29139640-29139727)
chr6 (231-292)||(26085866-26085927)
chr6 (229-292)||(29139857-29139919)
chr6 (218-288)||(25525137-25525207)
chr6 (229-292)||(34228071-34228134)
chr6 (237-292)||(26047584-26047639)
chr6 (237-292)||(26049609-26049664)
chr6 (239-290)||(26065830-26065881)
chr6 (237-292)||(26070778-26070833)
chr6 (231-284)||(19697073-19697126)
[»] chr4 (2 HSPs)
chr4 (224-287)||(30576119-30576182)
chr4 (224-287)||(23007853-23007916)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 29143027 - 29143310
Alignment:
Q  19 cttatactctctttgatttccgcatcatttctaaccgcatccacctggcagtcttgttgcccggctttacataggagttctgactccatcatt-gtatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29143027 cttatactctctttgatttccgcatcatttctaaccgcatccacctggcagtcttgttgcccggctttacataggagttctgactccatcatttgtatca 29143126  T
Q  118 taacaatgtcgttgcagtgccttataaatgtttatgaagaaattttctgccgcatgattttatcattttgttcttctgagacaaacaagcatgcacacgc 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29143127 taacaatgtcgttgcagtgccttataaatgtttatgaagatattttctgccgcatgattttatcattttgttcttctgagacaaacaagcatgcacacgc 29143226  T
Q  218 aggcggccttttcttttctgtattatagatccaacctatatgatcctagttgttctaagtaatgcttctgacaatctgtgctgc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  29143227 aggcggccttttcttttctgtattatagatccaacctatatgatcctagttgttctaagtaatgcttctgacaatgtgtactgc 29143310  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 25516982 - 25516899
Alignment:
Q  218 aggcggccttttcttttctgtattatagatccaacctatatgatcctagttgttctaagtaatgcttctgacaatctgtgctgc 301  Q
    |||| ||||| | |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||    
T  25516982 aggctgccttcttttttctgtattatagatccaacatatatgatcctagttgttccaagtaatgcttctgacaatgtgtactgc 25516899  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 29139640 - 29139727
Alignment:
Q  40 gcatcatttctaaccgcatccacctggcagtcttgttgcccggctttacataggagttctgactccatca-ttgtatcataacaatgt 126  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||   ||||||| || |||||| ||||||||||    
T  29139640 gcatcattcctaaccgcctccacctggcagtcttgttgcccggctttacatgggagtgtcgactccaccatttgtattataacaatgt 29139727  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 26085927 - 26085866
Alignment:
Q  231 ttttctgtattatagatccaacctatatgatcctagttgttctaagtaatgcttctgacaat 292  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||||||||||| |||||||    
T  26085927 ttttctgtattatagatccaacatatatgatcctaattgttccaagtaatgcttgtgacaat 26085866  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 29139857 - 29139919
Alignment:
Q  229 tcttttctgtattatagatccaacctatatgatcctagttgttctaagtaatgcttctgacaat 292  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  29139857 tcttttctgtattata-atccaacatatatgatcctagttgttccaagtaacgcttctgacaat 29139919  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 25525207 - 25525137
Alignment:
Q  218 aggcggccttttcttttctgtattatagatccaacctatatgatcctagttgttctaagtaatgcttctga 288  Q
    |||| ||||| | |||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||    
T  25525207 aggctgccttcttttttctgtattatagatccaatatatatgatcctagttgttccacgtaatgcttctga 25525137  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 34228071 - 34228134
Alignment:
Q  229 tcttttctgtattatagatccaacctatatgatcctagttgttctaagtaatgcttctgacaat 292  Q
    |||||||||  ||| |||||||||||||||||||| || ||||| |||||||||||||||||||    
T  34228071 tcttttctgcgttacagatccaacctatatgatccgagctgttccaagtaatgcttctgacaat 34228134  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 26047639 - 26047584
Alignment:
Q  237 gtattatagatccaacctatatgatcctagttgttctaagtaatgcttctgacaat 292  Q
    |||||||||||||||| |||||||||| | |||||| ||||||||||| |||||||    
T  26047639 gtattatagatccaacatatatgatcccaattgttccaagtaatgcttgtgacaat 26047584  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 26049664 - 26049609
Alignment:
Q  237 gtattatagatccaacctatatgatcctagttgttctaagtaatgcttctgacaat 292  Q
    |||||||||||||||| |||||||||| | |||||| ||||||||||| |||||||    
T  26049664 gtattatagatccaacatatatgatcccaattgttccaagtaatgcttgtgacaat 26049609  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 26065881 - 26065830
Alignment:
Q  239 attatagatccaacctatatgatcctagttgttctaagtaatgcttctgaca 290  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||| |||||    
T  26065881 attatagatccaacatatatgatcctaattgttccaagtaatgcttgtgaca 26065830  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 26070833 - 26070778
Alignment:
Q  237 gtattatagatccaacctatatgatcctagttgttctaagtaatgcttctgacaat 292  Q
    |||||||||||||||| |||||||||| | |||||| ||||||||||| |||||||    
T  26070833 gtattatagatccaacatatatgatcccaattgttccaagtaatgcttgtgacaat 26070778  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 19697126 - 19697073
Alignment:
Q  231 ttttctgtattatagatccaacctatatgatcctagttgttctaagtaatgctt 284  Q
    ||||||||| ||||||||||| |||||||||  ||||||||| |||||||||||    
T  19697126 ttttctgtagtatagatccaaactatatgatgttagttgttccaagtaatgctt 19697073  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 30576182 - 30576119
Alignment:
Q  224 ccttttcttttctgtattatagatccaacctatatgatcctagttgttctaagtaatgcttctg 287  Q
    |||| |||||||||| ||| |||||||||||| || |||| |||||||| ||||||||||||||    
T  30576182 ccttctcttttctgtgttacagatccaacctacatcatccgagttgttccaagtaatgcttctg 30576119  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 23007916 - 23007853
Alignment:
Q  224 ccttttcttttctgtattatagatccaacctatatgatcctagttgttctaagtaatgcttctg 287  Q
    |||| |||||| ||| ||| |||||||||||| || |||| |||||||| ||||||||||||||    
T  23007916 ccttctcttttatgtgttacagatccaacctacatcatccgagttgttccaagtaatgcttctg 23007853  T

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