View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12928_low_2 (Length: 740)
Name: NF12928_low_2
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_low_2 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 580; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 19 - 729
Target Start/End: Original strand, 9998093 - 9998792
Alignment:
| Q |
19 |
catggtctcttactcaagctggaatggagaaaagatgcacgctaatcgcgatttaatcaccggctttctcaagaacacgctccgtttcaaggtaatattt |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9998093 |
catggtctcatactcaagctggaatggagaaaagatgcatgctaatcgcgatttaatcaccggctttcttaagaacacgctccgtttcaaggtaatattt |
9998192 |
T |
|
| Q |
119 |
tacctcataacataagcctttgattgcatcaagaatttaatttgtatgcactatatgtataaaaaacgtgacaataaattataggatgacggtgtaaaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9998193 |
tacctcataacataagcctttgattgcatcaagagtttaatttgtatgcactatatgtataaaaaacgtgacaataaattataggatgacggtgtaaaat |
9998292 |
T |
|
| Q |
219 |
aggtggcaatatattattgcataaataattgtatattaacttaaccctaaaattgtttgtttatcaatcatcatattagtatatgcttaaaattctatgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
9998293 |
aggtggcaatatattattgcataaataattgtatattaacttaaccctaaaattgtttgtttatcaatcatcatattagtatatgcttaaaattggatgt |
9998392 |
T |
|
| Q |
319 |
tttcatgcagggttttgtcatatcagattgggagggaatcgacaggataacttcacctcctcatgctaactacacattttcaattgaagccggagtgaat |
418 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9998393 |
tttaatgcagggttttgtcatatcagattgggagggaatcgacaggataacttcacctcctcatgctaactacacattttcaattgaagccggagtgaat |
9998492 |
T |
|
| Q |
419 |
gccggtattgacatggtaaactatgttttttactagtcttttgaatagccgtatattttatttttattattaggaattgaactcggtattttagggttta |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| |||||| |||||| |
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| T |
9998493 |
gccggtattgacatggtaaactatgttttttactagtcttttgaatagctgtatatttt-ttattattattaggaattgaactcggaattttaaggttta |
9998591 |
T |
|
| Q |
519 |
caatacttacacactctgcgaaccaaccacttgcactagatcttggtggtgttgattagtcttatttgattttattcataaaaaatatgatctttaatac |
618 |
Q |
| |
|
|||||||| |||| |||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
9998592 |
caatacttgcacattctgtgaaccaaccacttgcaccgaatcccggtggtgttgattagtc----------ttattcataaaaaatataatctttaatat |
9998681 |
T |
|
| Q |
619 |
ttacccttgtaatgatgcagataatgattccccataactacactgaattcattgatggcctaactttactagtgaaaaagaatgtcatacctatgagtag |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
9998682 |
ttacccttgtaatgatgcagataatgattccccataactacactgaattcattgatggcctaaccttactagtgaaaaagaatgtcatacctatgagtag |
9998781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 19 - 474
Target Start/End: Original strand, 10003796 - 10004264
Alignment:
| Q |
19 |
catggtctcttactcaagctggaatggagaaaagatgcacgctaatcgcgatttaatcaccggctttctcaagaacacgctccgtttcaaggtaatattt |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| || |
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|
| T |
10003796 |
catggtctcatactcaagctggaatggagaaaagatgcattctaatcgcgatttagtcaccggctttctcaagaacacgctccatttcagggtaatactt |
10003895 |
T |
|
| Q |
119 |
tacctcata--------acataagccttt-----gattgcatcaagaatttaatttgtatgcactatatgtataaaaaacgtgacaataaattataggat |
205 |
Q |
| |
|
||||||||| | | | ||| |||| |||||||||||| ||| |||| | ||| ||| ||||| |||| ||||||||||||| || |
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|
| T |
10003896 |
tacctcataggccttggatttcatagtttcgaaagattatatcaagaatttattttttatgaattatctgtgtaaaagacgtaacaataaattatactat |
10003995 |
T |
|
| Q |
206 |
gacggtgtaaaataggtggcaatatattattgcataaataattgtatattaacttaaccctaaaattgtttgtttatcaatcatcatattagtatatgct |
305 |
Q |
| |
|
||| |||||||||||||| | ||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
10003996 |
gactgtgtaaaataggtgactatatattatagcataaataattgtatattaacttaagcctgaaattgtttatttatcgatcatcatattagtatatgct |
10004095 |
T |
|
| Q |
306 |
taaaattctatgttttcatgcagggttttgtcatatcagattgggagggaatcgacaggataacttcacctcctcatgctaactacacattttcaattga |
405 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10004096 |
taaaattctatgtttttatgcagggttttgtcatatcagattggaagggaattgacaggataacttcacctcctcatgctaactacacattttcaattga |
10004195 |
T |
|
| Q |
406 |
agccggagtgaatgccggtattgacatggtaaactatgttttttactagtcttttgaatagccgtatat |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
10004196 |
agccggagtgaatgccggtattgacatggtaaactatgaattttactaatcttttgaatagccttatat |
10004264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 505 - 729
Target Start/End: Original strand, 10004264 - 10004488
Alignment:
| Q |
505 |
tattttagggtttacaatacttacacactctgcgaaccaaccacttgcactagatcttggtggtgttgattagtcttatttgattttattcataaaaaat |
604 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||| || | ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10004264 |
tattttagggtttacaatacttgcacactctgggaaccaaccaatttctctaaatcctggtggtgttgattagtcttatttgattttattcataaaaaat |
10004363 |
T |
|
| Q |
605 |
atgatctttaatacttacccttgtaatgatgcagataatgattccccataactacactgaattcattgatggcctaactttactagtgaaaaagaatgtc |
704 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
10004364 |
atgatctttaatacttacccttttaatgatgcagataatgattccctttaactacacggaattcatcgatggcctaaccttactagtgaaaaagaatgtc |
10004463 |
T |
|
| Q |
705 |
atacctatgagtagaattgatgatg |
729 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10004464 |
atacctatgagtagaattgatgatg |
10004488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 264 - 729
Target Start/End: Original strand, 9991183 - 9991637
Alignment:
| Q |
264 |
cctaaaattgtttgtttatcaatcatcatattagtatatgcttaaaattctatgttttcatgcagggttttgtcatatcagattgggagggaatcgacag |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9991183 |
cctaaaattgtttgtttatcaatcatcatattagtatacgcctaaaattatatgttttcatgcagggttttgtcatatcagattgggagggaattgacag |
9991282 |
T |
|
| Q |
364 |
gataacttcacctcctcatgctaactacacattttcaattgaagccggagtgaatgccggtattgacatggtaaactatgttttttactagtcttttgaa |
463 |
Q |
| |
|
||||||||| || ||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||||||||| || || | |||||| || |
|
|
| T |
9991283 |
gataacttccccgcctcatgctaattacacctattcaattgaagctggagtgaatgccggtattgacatggtaaactatgattcttgcaagtcttccgat |
9991382 |
T |
|
| Q |
464 |
tagccgtatattttatttttattattaggaattgaactcggtattttagggtttacaatacttacacactctgcgaaccaaccacttgcactagatcttg |
563 |
Q |
| |
|
||| || ||||||| ||||||||| || || ||| || ||||||| | | |||||| ||||| |||||| |||||||||||| |
|
|
| T |
9991383 |
aagc--------ttttttttatgattaggaatccaattcagtacccta-aatttacaacattcacacaccctgcgcaccaactacttgcactagactcca |
9991473 |
T |
|
| Q |
564 |
gtggtgttgattagtcttatttgattttattcataaaaaatatgatctttaatacttacccttgtaatgatgcagataatgattccccataactacactg |
663 |
Q |
| |
|
| |||||||||||| ||| | ||||| | |||| || |||||| |||||||| | ||||| ||| ||||||||||||||||| ||||||||| | |
|
|
| T |
9991474 |
gcggtgttgattagatttaatcgattt--tgcatagaatgtatgatatttaatacatgttcttgtgatgctgcagataatgattccctttaactacacag |
9991571 |
T |
|
| Q |
664 |
aattcattgatggcctaactttactagtgaaaaagaatgtcatacctatgagtagaattgatgatg |
729 |
Q |
| |
|
||||||| |||||| | |||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
9991572 |
aattcatagatggcttgactttactagtgaaaagcaatgccatacctatgagtagaattgatgatg |
9991637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 293 - 443
Target Start/End: Original strand, 10012693 - 10012843
Alignment:
| Q |
293 |
attagtatatgcttaaaattctatgttttcatgcagggttttgtcatatcagattgggagggaatcgacaggataacttcacctcctcatgctaactaca |
392 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10012693 |
attagtatatgcttaaaattctttgttttcctttagggttttaccatatcagattgggagggaattgacaggataacttcacctcctcatgctaactaca |
10012792 |
T |
|
| Q |
393 |
cattttcaattgaagccggagtgaatgccggtattgacatggtaaactatg |
443 |
Q |
| |
|
||| ||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
10012793 |
catattcaattgaagcctcggtgaatgccggtcttgacatggtaaactatg |
10012843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 9990921 - 9991024
Alignment:
| Q |
19 |
catggtctcttactcaagctggaatggagaaaagatgcacgctaatcgcgatttaatcaccggctttctcaagaacacgctccgtttcaaggtaatattt |
118 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||| ||||| | || |
|
|
| T |
9990921 |
catggtgtcttactcaagctggaacggagaaaaaatgcacgctaatcgcgatttaatcaccggttttctcaagaacacacttcgtttcagggtaaaactt |
9991020 |
T |
|
| Q |
119 |
tacc |
122 |
Q |
| |
|
|||| |
|
|
| T |
9991021 |
tacc |
9991024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 10012452 - 10012561
Alignment:
| Q |
19 |
catggtctcttactcaagctggaatggagaaaagatgcacgctaatcgcgatttaatcaccggctttctcaagaacacgctccgtttcaaggtaatattt |
118 |
Q |
| |
|
|||| ||||||||||||||| ||||||| | || ||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||| || |
|
|
| T |
10012452 |
catgatctcttactcaagcttgaatggacacaaaatgcatgctaatcacgatttagtcaccggctttctcaagaacaagctccgtttcagggtaatactt |
10012551 |
T |
|
| Q |
119 |
tacctcataa |
128 |
Q |
| |
|
|| ||||||| |
|
|
| T |
10012552 |
tatctcataa |
10012561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 613 - 729
Target Start/End: Original strand, 10012915 - 10013031
Alignment:
| Q |
613 |
taatacttacccttgtaatgatgcagataatgattccccataactacactgaattcattgatggcctaactttactagtgaaaaagaatgtcatacctat |
712 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||| ||||| |||||||| |||||||| ||||| ||||| | ||||||||||||||||| |||||| || |
|
|
| T |
10012915 |
taatacttaaccttgttatggtgcagataatggttcccatgaactacacagaattcatcgatggactaacctcactagtgaaaaagaatgccataccaat |
10013014 |
T |
|
| Q |
713 |
gagtagaattgatgatg |
729 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10013015 |
gagtagaattgatgatg |
10013031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 35992716 - 35992782
Alignment:
| Q |
324 |
tgcagggttttgtcatatcagattgggagggaatcgacaggataacttcacctcctcatgctaacta |
390 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || ||| | || || || ||||||||||||||||| |
|
|
| T |
35992716 |
tgcagggttttgtcatatcagattggcagggtattgaccgaattacctctcctcctcatgctaacta |
35992782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 552
Target Start/End: Original strand, 35461880 - 35461929
Alignment:
| Q |
503 |
ggtattttagggtttacaatacttacacactctgcgaaccaaccacttgc |
552 |
Q |
| |
|
||||||||||||||||||| ||| |||||| ||||| ||||||||||||| |
|
|
| T |
35461880 |
ggtattttagggtttacaacactcacacacactgcgcaccaaccacttgc |
35461929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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