View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12928_low_22 (Length: 261)
Name: NF12928_low_22
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_low_22 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 10432443 - 10432679
Alignment:
| Q |
17 |
accaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttccc |
116 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10432443 |
accatcatacaagcaaatatttaggctcttcatactcattggtggttgcaacatatccagcacaactttcactttgtgcgagtcttcactttgttttccc |
10432542 |
T |
|
| Q |
117 |
catatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10432543 |
catatcagctctaactcctcaattttctctttgctttttaggttggcatcgtgtgcctctctggcatcaacaacattatccaggttcttgatggtaagtt |
10432642 |
T |
|
| Q |
217 |
taccctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
| ||||||||||||||||||||||| |||||| |||| |
|
|
| T |
10432643 |
ttccctgtaggtttgggaatttccttagctctttgat |
10432679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 10033669 - 10033434
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
||||||||||| |||||| | |||||||| | | |||||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
10033669 |
ccaccatacaaacaaatattcaggctctttagatttattggtggttgcaaaatatcgagcacaactttcactttttgcgactcttcactttgttttcccc |
10033570 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10033569 |
atatcagctctaactcctcaattttctctttgcttttcaggtttgcatcgtgtgcctctctggcatcaacaacattatccaggttcttgatggtaagttt |
10033470 |
T |
|
| Q |
218 |
accctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
|| |||||||||||||||||||| |||||| |||| |
|
|
| T |
10033469 |
tccttgtaggtttgggaatttccttagctctttgat |
10033434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 10262367 - 10262132
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
||||||||||| ||||| | |||||||| | | |||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
10262367 |
ccaccatacaaacaaattttcaggctctttagatttattggtggttgcaacatatcgagcacaactttcactttttgcgactcttcactttgttttcccc |
10262268 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10262267 |
atatcagctctaactcctcaattttctctttgcttttcaggtttgcatcgtgtgcctctctggcatcaacaacattatccaggttcttgatggtaagttt |
10262168 |
T |
|
| Q |
218 |
accctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
|| |||||||||||||||||||| |||||| |||| |
|
|
| T |
10262167 |
tccttgtaggtttgggaatttccttagctctttgat |
10262132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 10665195 - 10664960
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
|||||||||||| ||||| | |||||||||| | |||||||||||||||||||||| || ||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
10665195 |
ccaccatacaagaaaatattcaggctcttcaaatttattggtggttgcaacatatcgagtacaactttcactttttgcgaatcttcactttgttttcccc |
10665096 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagttt |
217 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10665095 |
atatcagctctaacttctcaatcttctctttgcttttcaagttggcatcgtgtgcctctctggcatcaacaacattatccaggttcttgatggtaagttt |
10664996 |
T |
|
| Q |
218 |
accctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| |
|
|
| T |
10664995 |
tccctgtaggtttgggaatttccttagctctttgat |
10664960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 10128594 - 10128359
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
||||||||||| |||||| | |||||||| | | |||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
10128594 |
ccaccatacaaacaaatattcaggctctttagatttattggtggttgcaacatatcgagcacaactttcactttttgcgactcttcactttgttttcccc |
10128495 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagttt |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10128494 |
atatcagttctaactcctcaattttctctttgcctttcaggtttgcatcgtgtgcctctctggcatcaacaacattatccaggttcttgatggtaagttt |
10128395 |
T |
|
| Q |
218 |
accctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
|| |||||||||||||||||||| |||||| |||| |
|
|
| T |
10128394 |
tccttgtaggtttgggaatttccttagctctttgat |
10128359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 10519154 - 10518919
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
||||||||||| |||||| | |||||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
10519154 |
ccaccatacaaacaaatattcaggctcttcaaatttattggtggttgcaacatatcgagcacaactttcactttttgcgagtcgtcactttgttttcccc |
10519055 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagttt |
217 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10519054 |
atatcagctctaactcctcgattgtctctatgctttttaggttggcatcgtgtgcctctctggcatcaaccacattatccaggttcttgatggtaagttt |
10518955 |
T |
|
| Q |
218 |
accctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||| |
|
|
| T |
10518954 |
tccttgtaggtttgggaatttcctgagctctttgat |
10518919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 10374245 - 10374480
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||| | |||||| ||||||||||||||||| ||||||||| |||||| || ||||||||||||||||||||| |
|
|
| T |
10374245 |
ccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaacttttactttttgcaagtcttcactttgttttcccc |
10374344 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10374345 |
atatcagctctaactcctcaattttctctttgcctttcaggtttgcatcgtgtgcctctctggcatcaacaacattatctaggttcttgatggtaagttt |
10374444 |
T |
|
| Q |
218 |
accctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
|| |||||||||||||||||||| |||||| |||| |
|
|
| T |
10374445 |
tccttgtaggtttgggaatttccttagctctttgat |
10374480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 52 - 253
Target Start/End: Complemental strand, 9840496 - 9840295
Alignment:
| Q |
52 |
ttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttccccatatcagctctaactcctcaattttctctttgct |
151 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| | |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9840496 |
ttattggtggttgcaacatatcgagcacaactttcacttcttgcgaatcttcactatgttttccccatatcagctctaactcctcaatttgctctttgct |
9840397 |
T |
|
| Q |
152 |
tttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagtttaccctgtaggtttgggaatttcctgagctctctg |
251 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
9840396 |
tttcaggttggcatcgtgtgcgtctcgggcatcaacaacattatccaggttcttgatggtaagttttccctgtaggtttgggaatttcctgagctctttg |
9840297 |
T |
|
| Q |
252 |
at |
253 |
Q |
| |
|
|| |
|
|
| T |
9840296 |
at |
9840295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 29 - 253
Target Start/End: Original strand, 10362209 - 10362433
Alignment:
| Q |
29 |
gcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttccccatatcagctct |
128 |
Q |
| |
|
||||||| | |||||||||| | |||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
10362209 |
gcaaatattcaggctcttcaaatttattggtggttgcaacatatcaagcacaactttcactttttgcgactcttcactttgttttccccatatcagctct |
10362308 |
T |
|
| Q |
129 |
aactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagtttaccctgtaggt |
228 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
10362309 |
aactcctgaattttctctttgcttttcaagttggcatcatgtgcctctttggcatcaacaacattatctaggttcttgatggtaagttttccttgtaggt |
10362408 |
T |
|
| Q |
229 |
ttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
||||||||||||| |||||| |||| |
|
|
| T |
10362409 |
ttgggaatttccttagctctttgat |
10362433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 10090459 - 10090229
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
|||||||||||||||||| | | |||||||| | ||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
10090459 |
ccaccatacaagcaaatattcaagctcttcagatttattggaggttgcaacatatcgagcacaactttcactttttgcgagtcttcactttgctttcccc |
10090360 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10090359 |
atatcagctctaactcctcaattttctctttgcttttcaagttggcatcacgtgcctcccaggcatcaacaacattatacaggttcttgatggtaagttt |
10090260 |
T |
|
| Q |
218 |
accctgtaggtttgggaatttcctgagctct |
248 |
Q |
| |
|
|| |||||||||||||||||||| |||||| |
|
|
| T |
10090259 |
tccttgtaggtttgggaatttccttagctct |
10090229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 10197342 - 10197112
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
|||||||||||||||||| | | |||||||| | ||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
10197342 |
ccaccatacaagcaaatattcaagctcttcagatttattggaggttgcaacatatcgagcacaactttcactttttgcgagtcttcactttgctttcccc |
10197243 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10197242 |
atatcagctctaactcctcaattttctctttgcttttcaagttggcatcacgtgcctcccaggcatcaacaacattatacaggttcttgatggtaagttt |
10197143 |
T |
|
| Q |
218 |
accctgtaggtttgggaatttcctgagctct |
248 |
Q |
| |
|
|| |||||||||||||||||||| |||||| |
|
|
| T |
10197142 |
tccttgtaggtttgggaatttccttagctct |
10197112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 52 - 253
Target Start/End: Complemental strand, 9851374 - 9851173
Alignment:
| Q |
52 |
ttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttccccatatcagctctaactcctcaattttctctttgct |
151 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| | |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9851374 |
ttattggtggttgcaacatatcgagcacaactttcacttcttgcgaatcttcactatgttttccccatatcagctctaactcctcaatttgctctttgct |
9851275 |
T |
|
| Q |
152 |
tttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagtttaccctgtaggtttgggaatttcctgagctctctg |
251 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||| || |
|
|
| T |
9851274 |
tttcaggttggcatcgtgtgcctctcgggcatcaacaacattatccaggttcttgatggtaagttttccgtgtaggtttgggaatttccttagctctttg |
9851175 |
T |
|
| Q |
252 |
at |
253 |
Q |
| |
|
|| |
|
|
| T |
9851174 |
at |
9851173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 10582276 - 10582044
Alignment:
| Q |
21 |
ccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttccccata |
120 |
Q |
| |
|
||||| ||||||||| | |||||||||| | |||||| ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
10582276 |
ccatataagcaaatattcaggctcttcaaatttattgctggttgcaacatatcaagcacaactttcactttatgcgactcttcactttgttttccccata |
10582177 |
T |
|
| Q |
121 |
tcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagtttacc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
10582176 |
tcagctctaactcctcaattttctctttgcttttcaagctggcatcatgtgcctctttggcatcaacaacattatccacgttcttgatggtaagttttcc |
10582077 |
T |
|
| Q |
221 |
ctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||| |
|
|
| T |
10582076 |
ttgtaggtttgagaatttactgagctctttgat |
10582044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 11780382 - 11780602
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
|||||||||||||||||| | |||||||||| | ||||||| || |||| |||||| |||||||||||||||||| |||| || |||||||||||||||| |
|
|
| T |
11780382 |
ccaccatacaagcaaatattcaggctcttcagatttattggcggctgcagcatatcgagcacaactttcactttttgcgactcgtcactttgttttcccc |
11780481 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagttt |
217 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11780482 |
atattagctctaaatcctcaattttttctttgcttttcaggttggcatcgtgtgcctctccggcatcaacaacattatccaggttcttgatggtaagtgt |
11780581 |
T |
|
| Q |
218 |
accctgtaggtttgggaattt |
238 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
11780582 |
tctatgtaggtttgggaattt |
11780602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 11770903 - 11770668
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
|||||||||||||||||| | |||||||||| | ||||||| || |||| |||||| |||||| ||||||||||| |||| || |||||||||||||||| |
|
|
| T |
11770903 |
ccaccatacaagcaaatattcaggctcttcagatttattggcggctgcagcatatcgagcacatctttcactttttgcgactcgtcactttgttttcccc |
11770804 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagttt |
217 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| | |
|
|
| T |
11770803 |
atattagctctaaatcctcaattttttctttgcttttcaagttggcatcgtgtgcctctacggaatcaaaaacattatccaggttcttgatggtaagtgt |
11770704 |
T |
|
| Q |
218 |
accctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
| ||||||||||||| ||| | ||||||| |||| |
|
|
| T |
11770703 |
tctatgtaggtttgggagttttccgagctctttgat |
11770668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 10679104 - 10678886
Alignment:
| Q |
21 |
ccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttccccata |
120 |
Q |
| |
|
|||||||||| ||||| || ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10679104 |
ccatacaagccaatacgaagcctcttcagacttattggtggttgcaacatatctagaacaactttcacttttcgcgagtcttcactttgttttccccaca |
10679005 |
T |
|
| Q |
121 |
tcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagtttacc |
220 |
Q |
| |
|
|||||||||||||||||||| ||||||| || |||||||||||| | ||| || | |||||||| ||||||| ||||||||||| |||||||| || |
|
|
| T |
10679004 |
acagctctaactcctcaatttgctctttgtcttccaggttggcatcttttgcatccgtggcatcaacgacattatgaaggttcttgatagtaagttttcc |
10678905 |
T |
|
| Q |
221 |
ctgtaggtttgggaatttc |
239 |
Q |
| |
|
||||| || |||||||||| |
|
|
| T |
10678904 |
ctgtaagtgtgggaatttc |
10678886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 10186049 - 10185814
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
|||||||||||||||||| | || ||||||| | |||||||||||||||||||||| |||| |||||||||||| | || ||||||||||||||||||| |
|
|
| T |
10186049 |
ccaccatacaagcaaatattcagactcttcaaatttattggtggttgcaacatatctagcaatactttcactttttgtgaatcttcactttgttttcccc |
10185950 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagttt |
217 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| | |||||||||| ||| |||| |||||| || ||||||| |
|
|
| T |
10185949 |
atatcatctctaactcctcaatttggtctttgcttttaaggttggcatcacatgcctctgtggcatcaacaatattttccaagttcttaataataagttt |
10185850 |
T |
|
| Q |
218 |
accctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
| | ||||||||| |||| | || |||||| |||| |
|
|
| T |
10185849 |
tcgccgtaggtttgtgaatctacttagctctttgat |
10185814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 10079079 - 10078892
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
|||||||||||||||||| | || ||||||| | |||||||||||||||||||||| |||| |||||||||||| | || ||||||||||| ||||||| |
|
|
| T |
10079079 |
ccaccatacaagcaaatattcagactcttcaaatttattggtggttgcaacatatcgagcaatactttcactttttgtgaatcttcactttgctttcccc |
10078980 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttctt |
205 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| | |||||||||| ||| |||| |||||| |
|
|
| T |
10078979 |
atatcatctctaactcctcaatttggtctttgcttttaaggttggcatcacatgcctctgtggcatcaacaatattttccaagttctt |
10078892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 10530313 - 10530097
Alignment:
| Q |
21 |
ccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttccccata |
120 |
Q |
| |
|
|||||||||| |||| |||||||||| | |||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
10530313 |
ccatacaagccaatatgaaggctcttcagagttattggtggttgcaacatatctagaacaactttcacttttcgcgagtcttcactttcttttccccaca |
10530214 |
T |
|
| Q |
121 |
tcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagtttacc |
220 |
Q |
| |
|
||| ||||||||||||||| ||| || || |||||||||||| | ||| || | |||||||| ||||||| ||| |||||||| |||||||| || |
|
|
| T |
10530213 |
acagacctaactcctcaatttgctc--tgtcttccaggttggcatcttttgcatccatggcatcaacgacattatgcagtttcttgatagtaagttttcc |
10530116 |
T |
|
| Q |
221 |
ctgtaggtttgggaatttc |
239 |
Q |
| |
|
||||| || |||||||||| |
|
|
| T |
10530115 |
ctgtaagtgtgggaatttc |
10530097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 10502190 - 10502020
Alignment:
| Q |
83 |
tttcacttttcgcgagtcttcactttgttttccccatatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagca |
182 |
Q |
| |
|
|||| ||||| | ||||||||| ||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
10502190 |
tttctctttttgtgagtcttcaatttgtttgccccataacaactctaactcttcaattttctctttgcttttcaggttggcatcgtgtgcctccgtggca |
10502091 |
T |
|
| Q |
183 |
tcaacaacattatccaggttcttgatggtaagtttaccctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| || ||||||| | |||||||| |||||| |||| |
|
|
| T |
10502090 |
tcaactacattatttaggttcttgatggtaagttttccttgtaggtgcgagaatttccgaagctctttgat |
10502020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 13345714 - 13345634
Alignment:
| Q |
59 |
tggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttccccatatcagctctaactcctcaat |
139 |
Q |
| |
|
||||||||||||||| |||||| ||||| || ||||||||||||| ||||||| | |||| | ||||||||||||||| |
|
|
| T |
13345714 |
tggttgcaacatatcaagcacatctttctctattcgcgagtcttccgtttgtttgctccattgtaactctaactcctcaat |
13345634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 13172659 - 13172606
Alignment:
| Q |
59 |
tggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttt |
112 |
Q |
| |
|
||||||||||||||| |||||| ||||| || ||||||||||||| ||||||| |
|
|
| T |
13172659 |
tggttgcaacatatcaagcacatctttctctattcgcgagtcttccgtttgttt |
13172606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 56002 - 56237
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
||||||||||| |||||| | | |||||||| | |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
56002 |
ccaccatacaaacaaatattcaagctcttcaaatttattggtggttgcaacatatcgagcacaactttcactttttgcgagtcttcactttgatttcccc |
56101 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
56102 |
atatcagctctaactcctcaattttctctttgcttttcaggtttgcatcgtgtgcctctctggcatcaacaacattatccaggttattgatggtaagttt |
56201 |
T |
|
| Q |
218 |
accctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
|| |||||||||||||||||||| |||||| |||| |
|
|
| T |
56202 |
tccttgtaggtttgggaatttccttagctctttgat |
56237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 26908557 - 26908322
Alignment:
| Q |
18 |
ccaccatacaagcaaatacttaggctcttcatacttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttcccc |
117 |
Q |
| |
|
|||||||||||| ||| | |||||||||| | |||||||||| ||||||||||| ||||||| |||||||| | | || ||||||||||||||||||| |
|
|
| T |
26908557 |
ccaccatacaagtcaattttcaggctcttcagatttattggtggatgcaacatatcaagcacaaatttcacttgtagtgaatcttcactttgttttcccc |
26908458 |
T |
|
| Q |
118 |
atatcagctctaactcctcaattttctctttgcttttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagttt |
217 |
Q |
| |
|
| | || |||||||||||| ||||||||||| ||||||| ||||||||| | ||||||| | |||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
26908457 |
aaagcaactctaactcctcgattttctcttttcttttcaagttggcatcttctgcctctgtggcatcaacgacattatgcaggttcttaatggtaagttt |
26908358 |
T |
|
| Q |
218 |
accctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
|||||||||||| | ||||| ||||||||| |||| |
|
|
| T |
26908357 |
tccctgtaggttttgaaattttctgagctctttgat |
26908322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 11486670 - 11486511
Alignment:
| Q |
52 |
ttattggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttccccatatcagctctaactcctcaattttctctttgct |
151 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| |||| | ||| |||||||| ||||||||| |
|
|
| T |
11486670 |
ttattggtggatgcaacatatcaagcacaactttcacttttagcgagtcttcacttaattttccccatttcagatttaatatctcaatttgctctttgct |
11486571 |
T |
|
| Q |
152 |
tttcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggt |
211 |
Q |
| |
|
||| ||||||||||| | ||||||| | ||||||| ||||||| ||||||||||||||| |
|
|
| T |
11486570 |
tttaaggttggcatcttctgcctctgtggcatcaatgacattatgcaggttcttgatggt |
11486511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 253
Target Start/End: Original strand, 44956113 - 44956312
Alignment:
| Q |
54 |
attggtggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttccccatatcagctctaactcctcaattttctctttgcttt |
153 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||| |||||| || || ||||||| ||||||||||| |
|
|
| T |
44956113 |
attggtggttgcaacatatcaagcacgactttcacttttagcgagtcttcactatgttttccccatagcagctccaagtcttcaatttgctctttgcttt |
44956212 |
T |
|
| Q |
154 |
tcaggttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagtttaccctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
||||||| |||| ||||||||| | ||||| | ||||||| || |||||| ||| | ||||| || ||||||| || |||||| | |||||| |||| |
|
|
| T |
44956213 |
tcaggttcgcatagtgtgcctccttggcatctatgacattatgcaagttcttcatgatgagttttccttgtaggtgtgaaaatttcttaagctctttgat |
44956312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 253
Target Start/End: Original strand, 17851367 - 17851561
Alignment:
| Q |
59 |
tggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttttccccatatcagctctaactcctcaattttctctttgcttttcagg |
158 |
Q |
| |
|
||||||||||||||| ||||| |||| || |||||||||||||| |||||| |||||| ||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
17851367 |
tggttgcaacatatcaagcacgtctttttctattcgcgagtcttcagtttgttcgccccattgtagctccaacttctccattttctctttgcttttcaaa |
17851466 |
T |
|
| Q |
159 |
ttggcatcgtgtgcctctctagcatcaacaacattatccaggttcttgatggtaagtttaccctgtaggtttgggaatttcctgagctctctgat |
253 |
Q |
| |
|
|||||||| ||| ||||| || |||| |||| || ||||||||||||||||||| | || ||||| | ||| ||||| || |||||| |||| |
|
|
| T |
17851467 |
ttggcatcacctgcatctctggcctcaatgacatcatgcaggttcttgatggtaagtgttccttgtagatgtggaaattttctaagctctttgat |
17851561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 134329 - 134382
Alignment:
| Q |
59 |
tggttgcaacatatccagcacaactttcacttttcgcgagtcttcactttgttt |
112 |
Q |
| |
|
||||||||||||||| |||||| ||||| || ||||||||||||| ||||||| |
|
|
| T |
134329 |
tggttgcaacatatcaagcacatctttctctattcgcgagtcttccgtttgttt |
134382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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