View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12928_low_3 (Length: 726)
Name: NF12928_low_3
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 687; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 15 - 709
Target Start/End: Original strand, 38998885 - 38999579
Alignment:
| Q |
15 |
agattgaagtattgagaaaccatttgttgattctccttaacaacacttatgtcaggaaattcaattcttgaatactcaattggatccaacataacttcag |
114 |
Q |
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| T |
38998885 |
agattgaagtattgagaaaccatttgttgattctccttaacaacacttatgtcaggaaattcaattcttgaatactcaattggatccaacataacttcag |
38998984 |
T |
|
| Q |
115 |
atatctttctatcaagcaaaataacttccgacgatatcgacgaactatttgttgattctgataccaaagatgtgtctaaagataatgttaattgaacagt |
214 |
Q |
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| T |
38998985 |
atatctttctatcaagcaaaataacttccgacgatatcgacgaactatttgttgattctgataccaaagatgtgtctaaagataatgttaattgaacagt |
38999084 |
T |
|
| Q |
215 |
tccagctggagaatgaaaaagatcagttgaagaaaggctatagtcttgagttacttttccttttccaacaatttgtgaaattggaaccaaagcaaaccct |
314 |
Q |
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| T |
38999085 |
tccagctggagaatgaaaaagatcagttgaagaaaggctatagtcttgagttacttttccttttccaacaatttgtgaaattggaaccaaagcaaaccct |
38999184 |
T |
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| Q |
315 |
aaaagttggtcctccatgtgaattcttgctctactaaacatccaaatttcacatttcataacagcatctatttgagttatcttcatcctcaagttttcat |
414 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38999185 |
aaaagttgatcctccatgtgaattcttgctctactaaacatccaaatttcacatttcataacagcatctatttgagttatcttcatcctcaagttttcat |
38999284 |
T |
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| Q |
415 |
tgaatgttggattttttccacctccattgattattcttgtagaaagagtttcatcagggttgtaagtaagggagaatttagcatatacatcttgattatc |
514 |
Q |
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| T |
38999285 |
tgaatgttggattttttccacctccattgattattcttgtagaaagagtttcatcagggttgtaagtaagggagaatttagcatatacatcttgattatc |
38999384 |
T |
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| Q |
515 |
atagatgcaaatgttatgaatgtttctagcatgatgaacatagacatcaagaagacctgtgaactctgcttcatcttcatcatctaattgggtagctcta |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38999385 |
atagatgcaaatgttatgaatgtttctagcatgatgaacatagacatcaagaagacctgtgaactctgcttcatcttcatcatctaattgggtagctcta |
38999484 |
T |
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| Q |
615 |
ttcaaatttggattgtacctaaagttgttgttttgatgactctgattgaatgaatccattctaatcaatgtttttgccttgtatgtctgttcatc |
709 |
Q |
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| T |
38999485 |
ttcaaatttggattgtacctaaagttgttgttttgatgactctgattgaatgaatccattctaatcaatgtttttgccttgaatgtctgttcatc |
38999579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 32205247 - 32205166
Alignment:
| Q |
15 |
agattgaagtattgagaaaccatttgttgattctccttaacaacacttatgtcaggaaattcaattcttgaatactcaattg |
96 |
Q |
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|||||||| |||| ||||||||||||||||| ||| ||| ||||||||| | ||||||||| |||||||| || ||||||| |
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| T |
32205247 |
agattgaaatattcagaaaccatttgttgatgctcactaaaaacacttatataaggaaattcgattcttgagtattcaattg |
32205166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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