View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12928_low_6 (Length: 605)
Name: NF12928_low_6
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 387
Target Start/End: Original strand, 55739680 - 55740054
Alignment:
| Q |
13 |
aaaatctctccttggttaacaaattgatttcttctacaattaatttccacgatgctttataaatttttggtgtcatttatgattgaaaatttgaggcaac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55739680 |
aaaatctctccttggttaacaaattgatttcttctacaattaatttccacgatgctttataaatttttggtgtcatttatgattgaaaatttgaggcaac |
55739779 |
T |
|
| Q |
113 |
cttccttcttacctcaaaaacgaaagtatagagaatgtgggtgggatacccaatatatatatgtagatattactaggcaaaggaggaagggatataaata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55739780 |
cttccttcttacctcaaaaacgaaagtatagagaatgtgggtgggatacccaatatatatatgtagatattactaggcaaaggaggaagggatataaata |
55739879 |
T |
|
| Q |
213 |
tatgtctatttgtttattgatttttatcttatttttcagtccgcaaaatgaagagatcttatcaatttctgttgtaaaatgttttcattattgaaggaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55739880 |
tatgtctatttgtttattgatttttatcttatttttcagtccgcaaaatgaagagatcttatcaatttctgttgtaaaatgttttcattattgaaggaag |
55739979 |
T |
|
| Q |
313 |
agtgattgtgtgtttatctttttgagcggaagaatcattttgtgttagattgtgcataaattgtgactttctatg |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55739980 |
agtgattgtgtgtttatctttttgagcggaagaatcattttgtgttagattgtgcataaattgtgactttctatg |
55740054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 458 - 587
Target Start/End: Original strand, 55740126 - 55740255
Alignment:
| Q |
458 |
gaaggaaacaattgttattatattgaaatttaattggtttattttgaacaagttatatattatcgaagaacaaacatttaaaaatagtttaaagacgatt |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
55740126 |
gaaggaaacaattgttattatattgaaatttaattggtttattttgaacaagttatatattatcggagaacaaacatttaaaaatagtttaaagacgatt |
55740225 |
T |
|
| Q |
558 |
gttgtcagtgtaacccactgttgtgaatca |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
55740226 |
gttgtcagtgtaacccactgttgtgaatca |
55740255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University