View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12928_low_8 (Length: 551)
Name: NF12928_low_8
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 220 - 538
Target Start/End: Original strand, 31804692 - 31805015
Alignment:
| Q |
220 |
gtacacataaatttatagtccaactcacgttttttatgaatatatataaacacaaaccattttattttcaatccatttatcgtcagaactaattttatag |
319 |
Q |
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| T |
31804692 |
gtacacataaatttataattcaactcacgttttttataaatgtatataaacacaaaccattttattttcaatccatttatcgtcggaactaattttatag |
31804791 |
T |
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| Q |
320 |
agttaattcatgtcgcggcataaccaaacttacattaagtagaagtcaaggtcctccagattcatatcgctgagataatgataggaataaagaaaa---- |
415 |
Q |
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| T |
31804792 |
aatcaattcatgttgccgcataaccaaacttacattaagtagaagtcaaggtcctccagattcatatcgctgagataatgataggaataaagaaaagaaa |
31804891 |
T |
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| Q |
416 |
-aatatatataaggtgagatttaaagctctaatatttgaatttcttgtattatgctgaaatggcagctatctagtcatcatttcaacagtgaaaacgagt |
514 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
31804892 |
aaacatatataaggtgagatttaaagctctaatatttgaatttcttgtattatgctgaaatggcagctatatagtcatcatttcaaccgtgaaaacgagt |
31804991 |
T |
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| Q |
515 |
aatatcatgtatgctcttttatga |
538 |
Q |
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| T |
31804992 |
aatatcatgtatgctcttttatga |
31805015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 31804495 - 31804586
Alignment:
| Q |
22 |
gtgagggtgagtgtaaaatctgatttactgtagttggcacttttaagcgtatatttggtttcacttgaccaaaattaattgaagacgtgtag |
113 |
Q |
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| T |
31804495 |
gtgagggtgagtgtaaaatctgatttactgtagttggcacttttaagcgtatatttggtttcacttgaccaaaattaattgaagatgtgtag |
31804586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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