View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12928_low_9 (Length: 471)
Name: NF12928_low_9
Description: NF12928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12928_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 47501712 - 47502166
Alignment:
| Q |
18 |
ggttttactgctgcttattgggtgcgtgcgtgtattatcttcatatatatttgcttgttttttcaatgtcatctaatttgagaccttattgcccaataaa |
117 |
Q |
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| T |
47501712 |
ggttttactgctgcttattgggtgc----gtgtattatcttcatatatatttgcttgttttttcaatgtcatctaatttgagaccttattgcccaataaa |
47501807 |
T |
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| Q |
118 |
agtacactatgaaataaatatctcagcgggaactaattaaattatttaaatttgggttgttggatcaagattgagtgacccgtatttcaaaccgagtagt |
217 |
Q |
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| T |
47501808 |
agtacaatatgaaataaatatctcagcgagaac----taaattatttaaatttgggttgttggatcaagattgagtgacccgtatttcaaaccgagtagt |
47501903 |
T |
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| Q |
218 |
gttatatataaaag--------ttta-------tgatctacatcatttcaactaatttgacctaaaagtttatgaagttcgtccacccagatccaaaccc |
302 |
Q |
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| T |
47501904 |
gttatatatagcaggacacttatttactaatattgatctacataatttcaactaatttgacctaaaagtttatgaagttcgtccacccagatccaaaccc |
47502003 |
T |
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| Q |
303 |
tagtaaaaagaagaaaatactactaatattggcgtttnnnnnnnnnnnnnnnnnnngataatatgggtggttatagact----tgtgttattttaaagtt |
398 |
Q |
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| T |
47502004 |
tagtaaaaagaagaaaatactgctaatattggcgtttaaaaaaatgaaaaagaaaagataatatgggtgcttatagacttgtgtgtgttattttaaagtt |
47502103 |
T |
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| Q |
399 |
tcaaaatcaacaagtacttaaattgattaatttttaaagactgactttttgcatgtgatgatg |
461 |
Q |
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| T |
47502104 |
tcaaaatcaacaagtacttaaattgattaatttttaaagactgactttttgcatgtgatgatg |
47502166 |
T |
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