View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_high_14 (Length: 449)
Name: NF12929_high_14
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 26 - 420
Target Start/End: Complemental strand, 38423773 - 38423379
Alignment:
| Q |
26 |
ggttcagttagagaaaagaatgttaacatnnnnnnnnnggaatgttaattttaattttgagttcttagggaggttaactggtgatacgatatactagtta |
125 |
Q |
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| T |
38423773 |
ggttcagttagagaaaagaatgttaacataaaaaaaaaggaatgttaattttaattttgagttcttagggaggttaactggtgatacgatatactagtta |
38423674 |
T |
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| Q |
126 |
aagaaaataaaagttgaagttttacattgnnnnnnnctg--ttttctttttgtcaaataacctattagttaaaaattcatctttttaaagatgaattcta |
223 |
Q |
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| T |
38423673 |
aagaaaataaaagttaaagttttacattgaaaaaaactgttttttttttttgtcaaataatctattagttaaaaattcatctttttaaagatgaattcta |
38423574 |
T |
|
| Q |
224 |
gcttcttttgtgaaccgtacgcatcttgatcaatacacaacacttattagcannnnnnngaatttatagaaaactagaacgaaggggtcttacttaccag |
323 |
Q |
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|||||||||||||||| || ||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
38423573 |
gcttcttttgtgaaccata--catcttgatcaatacacaacaattattagcatttttttgaatttatagaaaactagaaggaaggggtcttacttaccag |
38423476 |
T |
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| Q |
324 |
acacgagtagatactgaaatccatccagttggcacatactactaaatttcccatttcataagacgcgtatactcaactcacgtcacgcacgacttga |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38423475 |
acacgagtagatactgaaatccatccagttggcacatactactaaatttcccatttcataagacgcgtatactcaactcacgtcacgcacgacttga |
38423379 |
T |
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