View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_high_17 (Length: 428)
Name: NF12929_high_17
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 412
Target Start/End: Original strand, 32819933 - 32820329
Alignment:
| Q |
16 |
agaccatgcagattcttgcatacaaggtacaaactgtcctagccaacaactcaacaaccttatcaaaagtctgattccaaagtgaaatctccttaagctg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32819933 |
agaccatgcagattcttgcatacaaggtacaaactgtcctggccaacaactcaacaaccttatcaaaagtctgattccaaagtgaaatctccttaagctg |
32820032 |
T |
|
| Q |
116 |
cctcacatcttgcttctgccatacaagcctctgctcaaacccccttctactctcctcattctgactattattctgaaacttcttcactgtttgctccaac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32820033 |
cctcacatcttgcttctgccatacaagcctctgctcaaacccccttctactctcctcattctgactattattctgaaacttcttcactgtttgctccaac |
32820132 |
T |
|
| Q |
216 |
tcattcaaaccccccattttactatacaaactcctagtagcactcacatacctatccattttcctcaccattccttccatatgcttaactaaaaacccca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32820133 |
tcattcaaaccccccattttactatacaaactcctagtagcactcacatacctatccattttcctcaccattccttccatatgcttaactaaaaacccca |
32820232 |
T |
|
| Q |
316 |
actcattcacatctataacaccactaacaatatcaccataaacatgctcaaacccttgcaaagcaggcacagaacacttcttccctaacctagaaac |
412 |
Q |
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| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32820233 |
attcattcacatctataacaccactaacaatatcaccatagacatgctcaaacccttgcaaagcaggcacagaacacttcttccctaacctagaaac |
32820329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 42 - 412
Target Start/End: Complemental strand, 16549291 - 16548924
Alignment:
| Q |
42 |
gtacaaactgtcctagccaacaactcaacaaccttatcaaaagtctgattccaaagtgaaatctccttaagctgcctcacatcttgcttctgccatacaa |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | || ||||||||||| ||||||||| || |
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| T |
16549291 |
gtacaaactgtcctagccaacaactcaacaaccttatcaaaagtctgattccaaagagaaacatccttcaaatgtctcacatcttgtctctgccataaaa |
16549192 |
T |
|
| Q |
142 |
gcctctgctcaaacccccttctactctcctcattctgactattattctgaaacttcttcactgtttgctccaactcattcaaaccccccattttactata |
241 |
Q |
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| |||||||||| | | |||||||| ||| |||| |||||||||||||||||||||| ||| |||||||||||||| || ||| || |||||| |
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| T |
16549191 |
gtttctgctcaaaagctttcttactctccacatgctga---ttattctgaaacttcttcactgcttgttccaactcattcaacacctccaattcactata |
16549095 |
T |
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| Q |
242 |
caaactcctagtagcactcacatacctatccattttcctcaccattccttccatatgcttaactaaaaaccccaactcattcacatctataacaccacta |
341 |
Q |
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||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||| | |
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| T |
16549094 |
caaactcatagtaacattaacatacctatccattttcctcaccattccttccatatgcttaaccaaaaaccctaactccttcacatcaataacaccacca |
16548995 |
T |
|
| Q |
342 |
acaatatcaccataaacatgctcaaacccttgcaaagcaggcacagaacacttcttccctaacctagaaac |
412 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
16548994 |
acaatgtcactataaacatgctcaaacccttgcaaagcaggctcagaacacttcttacctaacctagaaac |
16548924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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