View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_high_18 (Length: 426)
Name: NF12929_high_18
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 414
Target Start/End: Complemental strand, 41609507 - 41609105
Alignment:
| Q |
9 |
gcaatgaacaaattaaattaaaggaatcaaagtatacaaattgatccatcgagagcatatgtatcctgctaattaaaatattgccacaactacaaaacat |
108 |
Q |
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| T |
41609507 |
gcaatgaacaaattaaattaaaggaatcaaagtatacaaattgatccatcgagagcatatgtatcctgctaattaaaatattgccacaactacaaaacat |
41609408 |
T |
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| Q |
109 |
gcacatagccactaaataaatgttttagcatgatgacgtggaaagtaaa---atgaacacgagatacacttgtcttttggataactaaataattctagaa |
205 |
Q |
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| T |
41609407 |
gcacatagccactaaataaatgttttagcatgatgacgtggaaagtaaataaatgaacacgagatacacttgtcttttcgataactaaataattctagaa |
41609308 |
T |
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| Q |
206 |
ggcactaacagccatcaaaaatggtaactatagaactagaaggtgattgaattcaaacattaaccaagttaccagaacaaaaggagcataaataggctgc |
305 |
Q |
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| T |
41609307 |
ggcactaacagccatcaaaaatggtaactatagaactagaaggtgattgaattcaaacattaaccaagttaccagaacaaaaggagcataaataggctgc |
41609208 |
T |
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| Q |
306 |
tgtatacatatacttagcaaacgggaataaataaaggttttgtannnnnnnnnnnnnnnnatcaccgtattatattataggtataaagtttatacagttg |
405 |
Q |
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| T |
41609207 |
tatatacatatacttagcaaacaggaataaataaaggttttgta------ttttttttttatcaccgtattatattataggtataaagtttctaccgttg |
41609114 |
T |
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| Q |
406 |
ttagtgatg |
414 |
Q |
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| T |
41609113 |
ttagtgatg |
41609105 |
T |
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