View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_high_27 (Length: 365)
Name: NF12929_high_27
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 137 - 350
Target Start/End: Complemental strand, 46382689 - 46382476
Alignment:
| Q |
137 |
tcggtggttccatttgaattgaacttttcccttnnnnnnntcagatttgattaagcgtggtgtatattaaaaatgattcggttattaccaacacataatt |
236 |
Q |
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| T |
46382689 |
tcggtggttccatttgaattgaacgtttcccttaaaaaaatcagatttgattaagcgtggtgtatattaaaaatgattcggttattaccaacacataatt |
46382590 |
T |
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| Q |
237 |
acattaatacaatgtaaaataacatattacaaaatgaataacgtcaatagatataacatgattacatattaatcaaattgaaattcagcaacaaggatat |
336 |
Q |
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| T |
46382589 |
acattaatacaatgtaaaataacatattacaaaatgaataacgtcaatagatataacatgattacatattaatcaaattgaaattcagcaacaaggatat |
46382490 |
T |
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| Q |
337 |
tcaataaatgaaaa |
350 |
Q |
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|||||||||||||| |
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| T |
46382489 |
tcaataaatgaaaa |
46382476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 46382759 - 46382688
Alignment:
| Q |
16 |
ataagaaagttaaagggttttgatgatggaatttagtggctgaagaaaataaaccttcaatactgcagcatc |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46382759 |
ataagaaagttaaagggttttgatgatggaatttagtggctgaagaaaataaaccttcaatactgcagcatc |
46382688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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