View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_high_29 (Length: 355)
Name: NF12929_high_29
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_high_29 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 35 - 355
Target Start/End: Complemental strand, 42968746 - 42968427
Alignment:
| Q |
35 |
ggtgtaggtgaagcgtcttaccaactaagttgagcttcattgtcaatttttaatattaattaagaaaataaacttattaggctgaatatttattggccaa |
134 |
Q |
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| T |
42968746 |
ggtgtaggtgaagcgtcttaccaactaagttgagcttcattgtcaatttttaatattaattaagaaaataaacttattaggctgaatatttattggccaa |
42968647 |
T |
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| Q |
135 |
agtataacnnnnnnnnnncaaaatggcnnnnnnntatttgaaatgatctaaattgggtattacctttacttttgccacatggaattgggatttggaggga |
234 |
Q |
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| T |
42968646 |
agtataacttttttttt-caaaatggcaaaaaaatatttgaaatgatctaaattgggtattacctttacttttgccacatggaattgggatttggaggga |
42968548 |
T |
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| Q |
235 |
actttatacaagaaccaagaaatggtaaaaataaatcatacacaagatgctcaatatgactgactgttatgtgcttttttcaacagttggagatggttgc |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42968547 |
actttatacaagaaccaagaaatggtaaaaataaatcatacacaagatgctcaatatgactgattgttatgtgcttttttcaacagttggagatggttgc |
42968448 |
T |
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| Q |
335 |
atgacagaaaagaacagcttt |
355 |
Q |
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| T |
42968447 |
atgacaggaaagaacagcttt |
42968427 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 36815804 - 36815843
Alignment:
| Q |
41 |
ggtgaagcgtcttaccaactaagttgagcttcattgtcaa |
80 |
Q |
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| T |
36815804 |
ggtgaagcgtcttaccaactaagttgcacttcattgtcaa |
36815843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 12260630 - 12260602
Alignment:
| Q |
35 |
ggtgtaggtgaagcgtcttaccaactaag |
63 |
Q |
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| T |
12260630 |
ggtgtaggtgaagcgtcttaccaactaag |
12260602 |
T |
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