View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12929_high_33 (Length: 344)

Name: NF12929_high_33
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12929_high_33
NF12929_high_33
[»] chr4 (5 HSPs)
chr4 (17-88)||(40892339-40892410)
chr4 (277-333)||(40886378-40886434)
chr4 (39-88)||(44143779-44143828)
chr4 (176-218)||(40892209-40892251)
chr4 (176-218)||(44143652-44143694)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 40892410 - 40892339
Alignment:
Q  17 atcatgattgatccaagtcaattgaatcaaatatttgaattatgcactcatacattgccttctttaaagccg 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40892410 atcatgattgatccaagtcaattgaatcaaatatttgaattatgcactcatacattgccttctttaaagccg 40892339  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 40886378 - 40886434
Alignment:
Q  277 taaggcctaacatcagtcctaaacatcaacccatccctcctactcgtcctgatgatg 333  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40886378 taaggcctaacatcagtcctaaacatcaacccatccatcctactcgtcctgatgatg 40886434  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 44143828 - 44143779
Alignment:
Q  39 tgaatcaaatatttgaattatgcactcatacattgccttctttaaagccg 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44143828 tgaatcaaatatttgaattatgcactcatacattgccttctttaaagccg 44143779  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 40892251 - 40892209
Alignment:
Q  176 tggcaatgataaactacactccacttagtgagctacttcaatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40892251 tggcaatgataaactacactccacttagtgagctacttcaatg 40892209  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 44143694 - 44143652
Alignment:
Q  176 tggcaatgataaactacactccacttagtgagctacttcaatg 218  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  44143694 tggcaatgataaaccatactccacttagtgagctacttcaatg 44143652  T

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