View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_high_37 (Length: 316)
Name: NF12929_high_37
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 48443226 - 48443350
Alignment:
| Q |
176 |
cgaggaggcagaaacatcggaaattgaaaagagaaagacaattacacgagttcaagacgcaagacagaataatgaaaaggtccttgttccatcattccct |
275 |
Q |
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| T |
48443226 |
cgaggaggcagaaacatcggaaattgaaaagagaaagacaattacacgagttcaagacgcaagacagaataatgaaaaggtccttgttccatcattccct |
48443325 |
T |
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| Q |
276 |
gatggtcgtcccagagaacggtggt |
300 |
Q |
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| T |
48443326 |
gatggtcgtaccagagaacggtggt |
48443350 |
T |
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Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 48443049 - 48443124
Alignment:
| Q |
14 |
agatggagatgggatgggagagaatgatattgagagcagacaggatgaaagtggtgaagaggaacaagaatggtca |
89 |
Q |
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| T |
48443049 |
agatggagatgggatgggagagaatgatattgagaacagacaggatgaaagtggtgaagaggaacaagaatggtca |
48443124 |
T |
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