View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12929_high_4 (Length: 706)

Name: NF12929_high_4
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12929_high_4
NF12929_high_4
[»] chr4 (1 HSPs)
chr4 (1-686)||(25988352-25989041)


Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 686
Target Start/End: Complemental strand, 25989041 - 25988352
Alignment:
Q  1 accgaacatcgccaataataatccgagaaagtaaaaagattgaatgcaactccgatgaatgtcaaaacccagata---cttcgatctgaagtgtcgatac 97  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  25989041 accgaacatcaccaataataatccgagaaagtaaaaagattgaatgtaactccgatgaatgtcaaaacccagatatgtcttcgatctgaagtgtcgatac 25988942  T
Q  98 tacataggttacaaacatctattcaaatttatgactaggaaacatctttccctatcatttttcaagtgatccataccaaaagatatcatataactctata 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  25988941 tacataggttacaaacatctattcaaatttatgactaggaaacatctttccctatcattttttaagtgatccataccaaaagacatcatataactctata 25988842  T
Q  198 tgtatcatataaaaaactatgcattcagcatcctagcaatgcatagaaatctgattccaagtgtaatcac--acnnnnnnnnntgctcacttgtgacaaa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |          |||||||||||||||||    
T  25988841 tgtatcatataaaaaactatgcattcagcatcctagcaatgcatagaaatctgattccaagtgtgatcacaaaaaaaaaaaaatgctcacttgtgacaaa 25988742  T
Q  296 acaaaacnnnnnnnnnnnctttctggggtttaccatataagg-nnnnnnnttgaagaagaaaccccatttccaaaaacatcatagttacttccaaagctt 394  Q
    |||||||           ||||||||||||||||||||||||        | ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25988741 acaaaac--attttttttctttctggggtttaccatataaggaaaaaaaatggaagaagaaaccccatttccaaaaacatcatagttactttcaaagctt 25988644  T
Q  395 ggatctttaccacagnnnnnnnggtttaaacattacaacattgnnnnnnnnnnnnccccaataaagcattcatcaaagcaatgagaaagcaataaaatac 494  Q
    |||||||||||||||       |||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  25988643 ggatctttaccacagaaaaaaaggtttaaacattacaacattgaaaaaacaaaaaccccaataaagcattcatcaaagcaatgagaaagcaataaaatac 25988544  T
Q  495 aatgaggttaagcatcatcacctttgatcaagcttgtagcattttctgtgccacaaacaaacattgagatcaacaacaaagcttgatgagagattggaaa 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25988543 aatgaggttaagcatcatcacctttgatcaagcttgtagcattttctatgccacaaacaaacattgagatcaacaacaaagcttgatgagagattggaaa 25988444  T
Q  595 atgagcttttaaggaaaatagtgaagcctcgttttgatgaatagtgaatgtgtattagaagatagaattaagaaagtgaggtgtagattttg 686  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25988443 atgagcttttaaggaaaatagtgaagcctcgttttgatgaatagtgaatgtgtattagaagatagaattaagaaagtgaggtgtagattttg 25988352  T

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