View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12929_high_40 (Length: 299)

Name: NF12929_high_40
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12929_high_40
NF12929_high_40
[»] chr8 (1 HSPs)
chr8 (5-299)||(388627-388921)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 388627 - 388921
Alignment:
Q  5 atgaatatgattttgatggtgattatgataatgatgagtttttgttgtgtctggaacaccgcatcttggtgtgatcatttgagaaactgtgttcgaatcg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  388627 atgaatatgattttgatggtgattatgataatgatgagtttttgttgtgtctggaacaccgcatcttggtgtgatcatttgagaaactgtattcgaatcg 388726  T
Q  105 agtttaccggttacttggagtccaagatttctttggtatttgatgatagctgattcaaaattcgaatcaaatttgtcgctgaatgtgtcattgtttttaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  388727 agtttaccggttacttggagtccaagatttctttggtatttgatgatagctgattcaaaattcgaatcaaatttgtcgctgaatgtgtcattgtttttaa 388826  T
Q  205 tgtacccgaaacgagataggtatcttttgaactgtgatattcctgtgatgttgttgcctctgacagaattggtgaagctatgaatgtcatgattt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  388827 tgtacccgaaacgagataggtatcttttgaactgtgatattcctgtgatgttgttgcctctgacagcattggtgaagctatgaatgtcatgattt 388921  T

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