View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_high_49 (Length: 249)
Name: NF12929_high_49
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 39893888 - 39893663
Alignment:
| Q |
13 |
aatatacgttggttattcaaaggtaacatcacattggacatatattaaatatcacgcaaaatataacataaaaacacaccaatcaaattacctgtttggc |
112 |
Q |
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| T |
39893888 |
aatatacgttggttattcaaaggtaacatcacattggacatatactaagtatcatgcaaaatataacataaaaacacaccaatcaaattacctgtttggc |
39893789 |
T |
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| Q |
113 |
cacaaattcagggtaattgtcctgaaacagttgaagggcttgtttggtagcttgtctaagttcccatttacctggtccaggagaatccttaagatcattg |
212 |
Q |
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| T |
39893788 |
cacaaattcagggtaattgtcctgaaacagttgaagggcttgtttggtagcttgtctaagttcccatttacctggtccaggagaatccttaagatcattg |
39893689 |
T |
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| Q |
213 |
acatgaacaatggtgcatacaccacc |
238 |
Q |
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| T |
39893688 |
acatgaacaatggtgcaaacaccacc |
39893663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 44642338 - 44642201
Alignment:
| Q |
101 |
tacctgtttggccacaaattcagggtaattgtcctgaaacagttgaagggcttgtttggtagcttgtctaagttcccatttacctggtccaggagaatcc |
200 |
Q |
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| T |
44642338 |
tacctgtttggctacaaattcaggataattatcttgaagcaattgaagggcttgtttggtagcttgtctaagctcccatttggtaggtccaggagaattc |
44642239 |
T |
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| Q |
201 |
ttaagatcattgacatgaacaatggtgcatacaccacc |
238 |
Q |
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| T |
44642238 |
ttaagatcattaacctgaacaatggtgcatataccacc |
44642201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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