View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12929_high_54 (Length: 239)

Name: NF12929_high_54
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12929_high_54
NF12929_high_54
[»] chr1 (4 HSPs)
chr1 (140-215)||(9418241-9418316)
chr1 (1-92)||(9418326-9418417)
chr1 (140-215)||(9423672-9423747)
chr1 (1-90)||(9423571-9423660)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 9418316 - 9418241
Alignment:
Q  140 taggaaagttacataataagtttttccatgtaaatcctttaaaactatactatactccagcaccaaaacaaaacta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9418316 taggaaagttacataataagtttttccatgtaaatcctttaaaactatactatactccagcaccaaaacaaaacta 9418241  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 9418417 - 9418326
Alignment:
Q  1 atagattgaagagttgaaaacaacatgtcaacttcatgttagttgtgttgaccagaccggttcaaaatattcagcaccaaaacaagatatag 92  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9418417 atagattgaagagttgaaaacaaaaactcaacttcatgttagttgtgttgaccagaccggttcaaaatattcagaaccaaaacaagatatag 9418326  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 9423672 - 9423747
Alignment:
Q  140 taggaaagttacataataagtttttccatgtaaatcctttaaaactatactatactccagcaccaaaacaaaacta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9423672 taggaaagttacataataagtttttccatgtaaatcctttaaaactatactatactccagcaccaaaacaaaacta 9423747  T

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Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 9423571 - 9423660
Alignment:
Q  1 atagattgaagagttgaaaacaacatgtcaacttcatgttagttgtgttgaccagaccggttcaaaatattcagcaccaaaacaagatat 90  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9423571 atagattgaagagttgaaaacaaaaactcaacttcatgttagttgtgttgaccagaccggttcaaaatattcagaaccaaaacaagatat 9423660  T

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