View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_high_55 (Length: 231)
Name: NF12929_high_55
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1636083 - 1636300
Alignment:
| Q |
1 |
cattcaatcaaacaataacctaaccctaataagtactattaatataactcttcactcattcacttgctttctaacccttttcttaactcttctccacgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1636083 |
cattcaatcaaacaataacctaaccctaataagtactattaatataactcttcactcattcacttgctttctaacccttttcttaactcttctccacgag |
1636182 |
T |
|
| Q |
101 |
atcgatcttgattgctttctttgttcttcattatatcaaaccctaatttccttctccgtttcactgcctcctctagagttcgtctgaaaagaacatgatg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1636183 |
atcgatcttgattgctttctttgttcttcattatatc-aaccctaatttccttctctgtttcactgcctcct-tagagttcgtctgaaaagaacatgatg |
1636280 |
T |
|
| Q |
201 |
atgaaccagtgttcatctca |
220 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
1636281 |
atgaaccagtgttcttctca |
1636300 |
T |
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