View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12929_high_56 (Length: 229)
Name: NF12929_high_56
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_high_56 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 38850527 - 38850353
Alignment:
| Q |
19 |
cagagagagtatcatgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgctta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38850527 |
cagagagagtatcatgtttgtgaggcattcaaagagtaggagggaaaaatttaaggagtgctttgaaaaggttggtggtgttgatagttcggttcactta |
38850428 |
T |
|
| Q |
119 |
catttggatatatctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataacggtgtgtgttt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
38850427 |
catttggatatatctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataccggtgtgcgttt |
38850353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 38325664 - 38325837
Alignment:
| Q |
20 |
agagagagtatcatgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttac |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||||||||| |||||||| |||||||| | |
|
|
| T |
38325664 |
agagagagcatcatgtttgtgaggcattcaaagagtagaagggagaaatttaaggaatgcattgaaaaggttggtggtgtcgatagttccgttcgcttgc |
38325763 |
T |
|
| Q |
120 |
atttggatatatctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataacggtgtgtgttt |
193 |
Q |
| |
|
|| ||| ||||||||| ||| ||||||||| || |||||||||| ||||||||||| ||| |||||||| |
|
|
| T |
38325764 |
atcaggactcgtctatgagtctgaactcaacttatttgatgcttgaaagtgctcttaaatatcggcgtgtgttt |
38325837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 38320918 - 38321087
Alignment:
| Q |
24 |
agagtatcatgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttacattt |
123 |
Q |
| |
|
|||| ||| ||||| | ||| ||||||||||| ||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||||| ||| | |
|
|
| T |
38320918 |
agagcatcttgttttttagggattcaaagagtcgaaggcaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagttcgcttgcatct |
38321017 |
T |
|
| Q |
124 |
ggatatatctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataacggtgtgtgttt |
193 |
Q |
| |
|
||| || ||||||| | ||| ||||||||| || |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
38321018 |
ggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgtgttt |
38321087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 38313409 - 38313570
Alignment:
| Q |
19 |
cagagagagtatcatgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgctta |
118 |
Q |
| |
|
||||||||| || ||||||| |||||||| ||||||||| || || ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38313409 |
cagagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttg |
38313508 |
T |
|
| Q |
119 |
catttggatatatctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaata |
180 |
Q |
| |
|
||| | ||||| |||||||| ||| ||||||||| || ||||| |||| ||||||||||| |
|
|
| T |
38313509 |
catctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaata |
38313570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 38306088 - 38306248
Alignment:
| Q |
20 |
agagagagtatcatgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttac |
119 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||| |||| ||||| |||||||| | |
|
|
| T |
38306088 |
agagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcgttgaaaaggttggtggtattgacagttcagttcgcttgc |
38306187 |
T |
|
| Q |
120 |
atttggatatatctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaata |
180 |
Q |
| |
|
|| |||| || ||||||| | ||| ||||||||| || |||| || || ||||||||||| |
|
|
| T |
38306188 |
atatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaata |
38306248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 38316828 - 38316979
Alignment:
| Q |
29 |
atcatgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttacatttggata |
128 |
Q |
| |
|
||||||||||||||| ||||||| | ||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||| || | ||| |||| | |
|
|
| T |
38316828 |
atcatgtttgtgaggaattcaaaaaatagaaggacaaaatttaaggagtgcattgaaaaggttggtggtgttgatagttctgtttgcctgcatctggaca |
38316927 |
T |
|
| Q |
129 |
tatctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaata |
180 |
Q |
| |
|
| ||||||||| ||| ||||||||| || |||||||||| ||||||||||| |
|
|
| T |
38316928 |
tgtctatgagtctgaactcaacttatgtgatgcttgaaagtgctcttaaata |
38316979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 38308820 - 38308976
Alignment:
| Q |
24 |
agagtatcatgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttacattt |
123 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
38308820 |
agagcatcatgtttgtgaggcgatcaaagagtcacagggaaaaatttaaggagtgcattgaaaaggttggtggtgttgatagttctgttcgtttgcatct |
38308919 |
T |
|
| Q |
124 |
ggatatatctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaata |
180 |
Q |
| |
|
|| || |||||||| ||| ||||||||| || ||||| |||| ||||||||||| |
|
|
| T |
38308920 |
agacatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaata |
38308976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 38300169 - 38300275
Alignment:
| Q |
20 |
agagagagtatcatgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttac |
119 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||| |||| |||||||| | |
|
|
| T |
38300169 |
agagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaaggagtgtattgcaaaggttggtggtgttgattgttccgttcgcttgc |
38300268 |
T |
|
| Q |
120 |
atttgga |
126 |
Q |
| |
|
|| |||| |
|
|
| T |
38300269 |
atctgga |
38300275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University