View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_high_58 (Length: 229)
Name: NF12929_high_58
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_high_58 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 38231141 - 38231022
Alignment:
| Q |
96 |
aatgtaatgaatgatcattctttttctttggttaaatgaattaatgaacatttcttgcttcaaagaaaaaattaatgaacacttttagcattgaatgttt |
195 |
Q |
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| T |
38231141 |
aatgtaatgagtgatcattctttttctttggttaaatgaattaatgaacatttcttgcttcaaagaaaaaattaatgaacatttttagcattgaatgttt |
38231042 |
T |
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| Q |
196 |
tttcaaccgtgtattatttg |
215 |
Q |
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|||||||||||||||||||| |
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| T |
38231041 |
tttcaaccgtgtattatttg |
38231022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 38231653 - 38231555
Alignment:
| Q |
14 |
cataggtaaataaaaaatttctcagtacctaaaaatcgaatgaatgaacattagaacatggtaaataattatatataaatgtaatgtaatgaatgatca |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38231653 |
cataggtaaataaaaaatttctcagtacctaaaaatcgaatgaatgaacattagaacatggtaaataattatatataaatgtaatgtaatgaatgatca |
38231555 |
T |
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