View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_high_7 (Length: 616)
Name: NF12929_high_7
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_high_7 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 11 - 598
Target Start/End: Complemental strand, 68947 - 68360
Alignment:
| Q |
11 |
cagagactatatatatgtaccttctcccatcagttgcaattcccaaatgtgaattagccatttcttttggtgtatcaaacctctctacccatttattact |
110 |
Q |
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| T |
68947 |
cagagacaatatatatgtaccttttcccatcagttgcaattcccaaatgtgaatttgccatttcttttggtgtatcaaacctctctacccatttattact |
68848 |
T |
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| Q |
111 |
cgtgaaatcatacacatcaacatgagagtgcacctgcattgtaagaaaccaaaatcatcaattaagctctttcgtcacacaattacggttgttattgtat |
210 |
Q |
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| T |
68847 |
cgtgaaatcatacacatcaacatgagagtgaacctgcaatgttagaaaccaaaatcatcaattaagcactttcgtcacacaattacggttgttgttgtat |
68748 |
T |
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| Q |
211 |
tcgacgaaataagaaccaactaacatggtcaagatttgcatatccggaaaagacatagaacaaatttagaatctgaatagcgtaaccatctaaacgaggc |
310 |
Q |
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| T |
68747 |
tcaacgaaataagaaccaactaacatgatcaagattggcatatccggaaaagacataaaacaaatttagaatctgaatagcgtaaccatctaaacgaggc |
68648 |
T |
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| Q |
311 |
acgggagcagatggcatttgttcccaattccattgaggagcaggtaaatctgcaaaggtagcagaaagaaaccttttcacctcaagaggaggttgtggtg |
410 |
Q |
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| T |
68647 |
acaggagcagatggcatctgttcccaattccattgaggagcaggtaaatctgcaaaggtagcagaaagaaaccttttcacctcaagaggaggttgtggtg |
68548 |
T |
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| Q |
411 |
gtgttatagtggtggtgttggggttatcgacgatccaattggaagcgattgaaagagaagtagaagaataagaatggaagatggtgttggcaatgaaaac |
510 |
Q |
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| T |
68547 |
gtgttatagtggtggtgttggggttatcgacgatccaattggaagcgattgaaagagaagtagaagaataagaatggaagatggtgttggcaatgaaaac |
68448 |
T |
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| Q |
511 |
aatggcgatgaatgttgaaagagagaggaagaagatgatgatgattttggttgaggaggtgtgtttttggtgaaaccttgttgttgtg |
598 |
Q |
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| T |
68447 |
aatggcaatgaatgttgaaagagagaggaagaagatgatgatgattttggttgaggaggtgtgtttttggtgaaaccttgttgttgtg |
68360 |
T |
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