View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_high_8 (Length: 588)
Name: NF12929_high_8
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 535
Target Start/End: Complemental strand, 32682346 - 32681823
Alignment:
| Q |
11 |
atcatcatatttcatatggaggcagcatgtttcccttactcaatcaccacggaaaaaa-caatcaaatagtaagacccacctgcacaatcccttcattaa |
109 |
Q |
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| T |
32682346 |
atcatcatatttcatatggaggcagcatgtttcccttactcaatcaccacggaaaaaaacaatcaaatagtaagacccacctgcacaatcccttcattaa |
32682247 |
T |
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| Q |
110 |
ggatacatgggatatgagcaatgtatcaattatttgtttatatcagtcaaaataagcaatatatttgaaagtggacatgtgaaagagtctaattgaagca |
209 |
Q |
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| T |
32682246 |
ggatacatgggatatgagcaatgtatcaattatttgtttatatcagtcaaaataagcaatatatttgaaagtggacatgtgaaagagtctaattgaagca |
32682147 |
T |
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| Q |
210 |
atgttttcagctccacgatgcaactttagcgtgttccaacgtatataaata-aaaatacagactatatagacgtgtgaattggcacactatagtttgcat |
308 |
Q |
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| T |
32682146 |
atgttttcagctccacgatgcaactttagcgtgttccaacgtatataaataaaaaatacagactatatagacgtgtgaattggcacactatagtttgcat |
32682047 |
T |
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| Q |
309 |
ataaatccattaaaatattaaattgtccataagaattagttcaactaactacgtcgatattactatctagattgaacaatgttattgagttcaaactaaa |
408 |
Q |
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| T |
32682046 |
ataaatccattaaaatattaaattgtccataaaaattagttcaactaactatgtcgatattactaactagattgaacaatgttattgagttcaaactaaa |
32681947 |
T |
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| Q |
409 |
gaccacacagttgtgtgtatgagttttatatggcgtttgtgatttcatctacaaacaaaatatataaaataatgatatgagtatttattgccagctcatt |
508 |
Q |
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| T |
32681946 |
-accatacacttgtgtgtatgagttttaaatggcgtttgtgatttcatctacaaacaaaaaatataaaataatg--atgagtatttattgccagctcatt |
32681850 |
T |
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| Q |
509 |
tctgcttgcactaacttgtgtcaatat |
535 |
Q |
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| T |
32681849 |
tctgcttgcactaacttatgtcaatat |
32681823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 528 - 574
Target Start/End: Complemental strand, 32681813 - 32681767
Alignment:
| Q |
528 |
gtcaatatgttaataatcagaaaagggggaagaaaaaatatatattg |
574 |
Q |
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| T |
32681813 |
gtcaatatgttaataatcagaaaagggggaagaaaaaatatatattg |
32681767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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