View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_10 (Length: 555)
Name: NF12929_low_10
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 8099182 - 8098779
Alignment:
| Q |
1 |
tattaacctttacatatatatgaagctagtcactctcacttgcatgtgggtacattattaatacatatataatagcaatagtttcccatcataagcgt-- |
98 |
Q |
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| T |
8099182 |
tattaacctttacatatatatgaagctagtcactctcacttgcatgtgggtacattattaatacatttataatagcaatagtttcccatcataagcgtgt |
8099083 |
T |
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| Q |
99 |
tttgagaaaaagtatttttaccattcttggctagttaaattgatactctgctaaatatttaattttgtttggaccattcaaaataacctcaatttgttgc |
198 |
Q |
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| T |
8099082 |
tttgagaaaaagtatttttaccattcttggctagttaaattgatgctgtaataaatatttgattttgtgtggaccattccaaataacctcaatttgttgc |
8098983 |
T |
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| Q |
199 |
tcacatcgttccaattaattgaattatcacgtaaaagtaagagattaatcttcttaaacaatctaaaaaattgatattgacaaaatgatgtcactcttan |
298 |
Q |
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| T |
8098982 |
ttacatcattccaattaattgaattatcacgtaaaagtaagagattaatcttcttaaagaatctaaaaaatggatattgacaaaatgatgtcactctta- |
8098884 |
T |
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| Q |
299 |
nnnnnnagtgactttgtaatagtcagtcaaatttccactttgtggtcattatataaccttagttggcattttaagaattccaaatcaaacacgacaaact |
398 |
Q |
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| T |
8098883 |
ttttttagtgactttgtaatagtcagtcaaatttccactttgtggtcattatataaccttagttggcattttaagaaatccaaatcaaacacgacaaact |
8098784 |
T |
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| Q |
399 |
gtgac |
403 |
Q |
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| T |
8098783 |
gtgac |
8098779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 138 - 284
Target Start/End: Original strand, 8102540 - 8102685
Alignment:
| Q |
138 |
ttgatactctgctaaatatttaattttgtttggaccattcaaaataacctcaatttgttgctcacatcgttccaattaattgaattatcacgtaaaagta |
237 |
Q |
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| T |
8102540 |
ttgatactctgataaatatttgattctgtgtg-accattccaaataacctcaatttgttgcttatatcattccaattaattgaattatcacgtaaaagta |
8102638 |
T |
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| Q |
238 |
agagattaatcttcttaaacaatctaaaaaattgatattgacaaaat |
284 |
Q |
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| T |
8102639 |
agagattaatcttcttaaacaatctaaaaaataaatattgacaaaat |
8102685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 457 - 540
Target Start/End: Complemental strand, 8098725 - 8098642
Alignment:
| Q |
457 |
caagtaaagggtaattaagtgtcgttcaataggtatttgtgagcaattgttacttgtctaaagagcaatcgtctatgattatta |
540 |
Q |
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| T |
8098725 |
caagtaaagggtaattaagtgtctttcaataggtatttgtgagcaattgttacttgtctaaagagcaatcgtctatgattatta |
8098642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 395
Target Start/End: Original strand, 3148392 - 3148460
Alignment:
| Q |
323 |
agtcaaatttccactttgtggtcattatataaccttagttggcattttaagaattccaaatcaaacacgacaa |
395 |
Q |
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| T |
3148392 |
agtcaagtttccactttgtggtca----ctaaccttagttggtgttttaagaaatccaaataaaacacgacaa |
3148460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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