View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_11 (Length: 541)
Name: NF12929_low_11
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Complemental strand, 37242677 - 37242163
Alignment:
| Q |
18 |
gttcttcctgtgctttttgtggcacaatgattgagtctgttgatcatctttttgtttcgtgcggtacgagatgtttaggtggatgaagtagtcttgttgc |
117 |
Q |
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| T |
37242677 |
gttcttcctgtgctttttgtggcacaatgattgagtctgttgatcatctttttgtttcgtgcggtatgagatgtttaggtggatgaagtagtcttgttgc |
37242578 |
T |
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| Q |
118 |
acctcaagacgtagctagtgtcattggatatttcaaggggatagagggtagtgggagagacaagattgttttagtcatagtttggcatgttttgtgcacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37242577 |
acctcaagacgtagctagtgtcattggatatttcaaggggatagagggtagtgggagagataagattgttttagtcatagtttggcatgttttgtgcacc |
37242478 |
T |
|
| Q |
218 |
atctggaagtttcagaatgatcttaatttttctgtgcggaatacttcaatggagtcgcttgtggatagacacaaattctcttcgtggaagtgatttttga |
317 |
Q |
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| T |
37242477 |
atctggaagtttcggaatgatcttaatttttctgtgcagaatacttcaatggagcagcttgtggatagagacaaattctcttcgtggaagtgatttttga |
37242378 |
T |
|
| Q |
318 |
ccaagaaccccagacttccatgctcctcttacggttgggagggcgaacaacatgtcatgtgttggcattagtgggaaggtgtacggtgggtgactctcaa |
417 |
Q |
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| T |
37242377 |
ccaagaaccccagacttccctgctcctcttacagttgggagggcgaacaacatgtcatgtgttggcatcagtgggaaggtgtacggtgggtgaatctcaa |
37242278 |
T |
|
| Q |
418 |
ccgattgggcttgttcgccgttttgttatggttctttgggtatttcttctttggtggcctctctaggagggttagtgttttgttgaggttctgtttggtg |
517 |
Q |
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| T |
37242277 |
ccaattgggcttgttcaccgtttttttatggttc-ttgggtatttcttctttggtggcctctctaggagggttagtgttttgttgaggttttgtttggtg |
37242179 |
T |
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| Q |
518 |
cttgtgtgatgatgtc |
533 |
Q |
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| T |
37242178 |
cttgtgtgttgatgtc |
37242163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 205 - 519
Target Start/End: Complemental strand, 37253689 - 37253378
Alignment:
| Q |
205 |
tgttttgtgcaccatctggaagtttcagaatgatcttaatttttctgtgcggaatacttcaatggagtcgcttgtggatagacacaaattctcttcgtgg |
304 |
Q |
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|||||||||||||||||| ||||||||||||| ||||| || | | | || | |||||||||||| ||||||||| | | |||||| ||||||||| |
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| T |
37253689 |
tgttttgtgcaccatctgaaagtttcagaatggtcttatttataatacgagggagacttcaatggagcggcttgtggacaaagccaaattatcttcgtgg |
37253590 |
T |
|
| Q |
305 |
aagtgatttttgaccaagaaccccagacttccatgctcctcttacggttgggagggcgaacaacatgtcatgtgttggcattagtgggaaggtgtacggt |
404 |
Q |
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| T |
37253589 |
aagtgattcctgaccaagaacctcatacttccttacgcctccattgagtgggagggt---caatatgccttgtgttggcatcagtaaggaggtgtctggt |
37253493 |
T |
|
| Q |
405 |
gggtgactctcaaccgattgggc-ttgttcgccgttttgttatggttctttgggtatttcttctttggtggcctctctaggagggttagtgttttgttga |
503 |
Q |
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||||||||||| |||||||||| |||||| || ||||||||| ||||| || | || |||||||| ||||||||||||||||||||||| ||||| || |
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| T |
37253492 |
gggtgactctcgaccgattgggggttgttcacctttttgttatcattcttagg-tgttccttctttgatggcctctctaggagggttagtggtttgtcga |
37253394 |
T |
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| Q |
504 |
ggttctgtttggtgct |
519 |
Q |
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||||| ||||||||| |
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| T |
37253393 |
tgttctatttggtgct |
37253378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 37253897 - 37253840
Alignment:
| Q |
18 |
gttcttcctgtgctttttgtggcacaatgattgagtctgttgatcatctttttgtttc |
75 |
Q |
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||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
37253897 |
gttcttcttgtgctttttgtggcccaatgattgagtttgttgatcatctttttgtttc |
37253840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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