View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12929_low_15 (Length: 449)
Name: NF12929_low_15
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 26 - 420
Target Start/End: Complemental strand, 38423773 - 38423379
Alignment:
| Q |
26 |
ggttcagttagagaaaagaatgttaacatnnnnnnnnnggaatgttaattttaattttgagttcttagggaggttaactggtgatacgatatactagtta |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38423773 |
ggttcagttagagaaaagaatgttaacataaaaaaaaaggaatgttaattttaattttgagttcttagggaggttaactggtgatacgatatactagtta |
38423674 |
T |
|
| Q |
126 |
aagaaaataaaagttgaagttttacattgnnnnnnnctg--ttttctttttgtcaaataacctattagttaaaaattcatctttttaaagatgaattcta |
223 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38423673 |
aagaaaataaaagttaaagttttacattgaaaaaaactgttttttttttttgtcaaataatctattagttaaaaattcatctttttaaagatgaattcta |
38423574 |
T |
|
| Q |
224 |
gcttcttttgtgaaccgtacgcatcttgatcaatacacaacacttattagcannnnnnngaatttatagaaaactagaacgaaggggtcttacttaccag |
323 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38423573 |
gcttcttttgtgaaccata--catcttgatcaatacacaacaattattagcatttttttgaatttatagaaaactagaaggaaggggtcttacttaccag |
38423476 |
T |
|
| Q |
324 |
acacgagtagatactgaaatccatccagttggcacatactactaaatttcccatttcataagacgcgtatactcaactcacgtcacgcacgacttga |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38423475 |
acacgagtagatactgaaatccatccagttggcacatactactaaatttcccatttcataagacgcgtatactcaactcacgtcacgcacgacttga |
38423379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University