View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_16 (Length: 441)
Name: NF12929_low_16
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 3 - 424
Target Start/End: Complemental strand, 26553634 - 26553213
Alignment:
| Q |
3 |
aatgaaatggccacaaaggcctttgaaatactatataaagtgaaacaatcaaatgattatgttcacaaccaagaaatacgtaagtccctaattgaaactc |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26553634 |
aatgaaatggccacaaaggcctttgaaatactatataaagtgaaacaatcaaatgattatgttcacaaccaagaaatacgtaagtccctaattgaaactc |
26553535 |
T |
|
| Q |
103 |
aaatgcaagtttgtgataatgcttacaaaccacagcaaactaccaaattttaaacatttaaacatcatagtttgaaaacatgattgaacatctttgacta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26553534 |
aaatgcaagtttgtgataatgcttacaaaccacagcaaactaccaaattttaaacatttaaacatcatagtttgaaaacatgattgaacatctttgacta |
26553435 |
T |
|
| Q |
203 |
gtgattcggacccaaaagtgcgagaagaaaatccctgtagttgcctgatgtttcagagtgaactgcatcattcagtgtcttcttgtatttctttgcatat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26553434 |
gtgattcggacccaaaagtgcgagaagaaaatccctgtagttgcctgatgtttcagagtgaactgcatcattcagtgtcttcttgtatttctttgcatat |
26553335 |
T |
|
| Q |
303 |
tcagctttgatatactgcatatcaatctcagtccttgttacaacgacccttatgagtgtgctatcattagtccccatacctttcatcgccttatacaaca |
402 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26553334 |
tcagctttgatatactgcatatcaatctcagtccttgttacaatgacccttatgagtgtgctatcattagtccccatacctttcatcgccttatacaaca |
26553235 |
T |
|
| Q |
403 |
cctgcatcgaggcaaaagtgtg |
424 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
26553234 |
cctgcatcgaggcaaaagtgtg |
26553213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 178 - 409
Target Start/End: Complemental strand, 26565278 - 26565047
Alignment:
| Q |
178 |
aaacatgattgaacatctttgactagtgattcggacccaaaagtgcgagaagaaaatccctgtagttgcctgatgtttcagagtgaactgcatcattcag |
277 |
Q |
| |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
26565278 |
aaacatgattgaacatctttgactaattattcggacccaaaagtgcgagaagaaaagccctatagttgccagatgtttcagagtgaactgcatcattcaa |
26565179 |
T |
|
| Q |
278 |
tgtcttcttgtatttctttgcatattcagctttgatatactgcatatcaatctcagtccttgttacaacgacccttatgagtgtgctatcattagtcccc |
377 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||| || | |||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |
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| T |
26565178 |
tgtcttcttatatttcttggcatattcagctttgatgtatttcatatcaatctcagtccttgttacgatgacccttatgagtgtggtatcattagtccct |
26565079 |
T |
|
| Q |
378 |
atacctttcatcgccttatacaacacctgcat |
409 |
Q |
| |
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| ||||||||| |||||||||||||||||||| |
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| T |
26565078 |
aaacctttcattgccttatacaacacctgcat |
26565047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 184 - 420
Target Start/End: Complemental strand, 26559707 - 26559471
Alignment:
| Q |
184 |
gattgaacatctttgactagtgattcggacccaaaagtgcgagaagaaaatccctgtagttgcctgatgtttcagagtgaactgcatcattcagtgtctt |
283 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
26559707 |
gattgaacatctttgactaattattgggacccaaaagtgcgagaagaaaagccctatagttgccggatgtttcagagtgaactgcatcattcaatgtctt |
26559608 |
T |
|
| Q |
284 |
cttgtatttctttgcatattcagctttgatatactgcatatcaatctcagtccttgttacaacgacccttatgagtgtgctatcattagtccccatacct |
383 |
Q |
| |
|
||| ||||||||||||||||||| |||||| || | |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | |||| |
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| T |
26559607 |
cttatatttctttgcatattcagttttgatgtatttcatatcaatctcagtccttgttacaatgacccttatgagtgtgtgatcattagtccctaaacct |
26559508 |
T |
|
| Q |
384 |
ttcatcgccttatacaacacctgcatcgaggcaaaag |
420 |
Q |
| |
|
||||| ||||||||||| |||||||| | |||||||| |
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| T |
26559507 |
ttcattgccttatacaatacctgcatggtggcaaaag |
26559471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 26565396 - 26565351
Alignment:
| Q |
86 |
gtccctaattgaaactcaaatgcaagtttgtgataatgcttacaaa |
131 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||||| |
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|
| T |
26565396 |
gtccctaactgaaactcgaatgcaagttcatgataatgcttacaaa |
26565351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 178 - 409
Target Start/End: Original strand, 50933491 - 50933722
Alignment:
| Q |
178 |
aaacatgattgaacatctttgactagtgattcggacccaaaagtgcgagaagaaaatccctgtagttgcctgatgtttcagagtgaactgcatcattcag |
277 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
50933491 |
aaacatgattgaacatctttgactaatgattgggacccaaaagtgcaagaagaaaagtcctgtagttgccagatgtttcagagtgaactgcatcattcaa |
50933590 |
T |
|
| Q |
278 |
tgtcttcttgtatttctttgcatattcagctttgatatactgcatatcaatctcagtccttgttacaacgacccttatgagtgtgctatcattagtcccc |
377 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||||| ||||| |||||||||||| |
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| T |
50933591 |
tgtctttttgtatttctttgcatattcagctttgatatattccatatcaatctcagtccttgttataattacccttatcagtgtatcatcattagtccct |
50933690 |
T |
|
| Q |
378 |
atacctttcatcgccttatacaacacctgcat |
409 |
Q |
| |
|
| ||||||||| |||||||||||||||||||| |
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|
| T |
50933691 |
aaacctttcattgccttatacaacacctgcat |
50933722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 345
Target Start/End: Original strand, 45506613 - 45506748
Alignment:
| Q |
210 |
ggacccaaaagtgcgagaagaaaatccctgtagttgcctgatgtttcagagtgaactgcatcattcagtgtcttcttgtatttctttgcatattcagctt |
309 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||||| ||| |||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
45506613 |
ggacctaaaagtgagagaagaaaagccctgtagtggccagatgtttccgagtgaactgcatcattcagcgtcttcttgtatttctttagatattcagctt |
45506712 |
T |
|
| Q |
310 |
tgatatactgcatatcaatctcagtccttgttacaa |
345 |
Q |
| |
|
| ||||| || | ||| |||||| |||| ||||||| |
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|
| T |
45506713 |
ttatataatgtagatctatctcactcctggttacaa |
45506748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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