View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12929_low_2 (Length: 903)

Name: NF12929_low_2
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12929_low_2
NF12929_low_2
[»] chr8 (16 HSPs)
chr8 (18-893)||(9572357-9573232)
chr8 (261-346)||(14949900-14949985)
chr8 (237-324)||(34849159-34849247)
chr8 (276-331)||(779027-779082)
chr8 (244-339)||(2487942-2488037)
chr8 (280-331)||(10358627-10358678)
chr8 (424-473)||(6950208-6950257)
chr8 (275-331)||(8629505-8629561)
chr8 (424-456)||(29972965-29972997)
chr8 (276-331)||(32840951-32841007)
chr8 (244-331)||(6950371-6950458)
chr8 (244-339)||(9700042-9700137)
chr8 (300-331)||(25869256-25869287)
chr8 (264-339)||(39551163-39551238)
chr8 (271-339)||(33808344-33808413)
chr8 (302-331)||(38421313-38421342)
[»] chr1 (30 HSPs)
chr1 (254-332)||(15709897-15709975)
chr1 (261-331)||(49692003-49692073)
chr1 (244-331)||(10199342-10199429)
chr1 (304-411)||(30371118-30371224)
chr1 (244-331)||(31517674-31517761)
chr1 (283-345)||(6262773-6262835)
chr1 (244-346)||(32515375-32515477)
chr1 (278-339)||(38867799-38867860)
chr1 (278-331)||(42336664-42336717)
chr1 (244-331)||(4549475-4549563)
chr1 (244-324)||(14737660-14737740)
chr1 (279-331)||(28689421-28689473)
chr1 (271-315)||(36514636-36514680)
chr1 (275-331)||(38001645-38001701)
chr1 (272-324)||(44422755-44422807)
chr1 (244-323)||(1662630-1662709)
chr1 (276-339)||(11211159-11211222)
chr1 (245-320)||(12763383-12763458)
chr1 (254-329)||(15579533-15579608)
chr1 (244-314)||(2295163-2295232)
chr1 (292-346)||(4699597-4699651)
chr1 (244-314)||(5741673-5741742)
chr1 (254-332)||(19389950-19390028)
chr1 (244-286)||(21002249-21002291)
chr1 (281-331)||(40413993-40414043)
chr1 (262-339)||(11639368-11639445)
chr1 (306-339)||(27963366-27963399)
chr1 (278-331)||(35058400-35058453)
chr1 (254-323)||(40304023-40304092)
chr1 (271-339)||(47498799-47498868)
[»] chr2 (13 HSPs)
chr2 (254-331)||(787381-787458)
chr2 (278-331)||(44606078-44606131)
chr2 (245-331)||(28677594-28677680)
chr2 (244-320)||(1318296-1318371)
chr2 (244-324)||(28803464-28803544)
chr2 (263-331)||(35485966-35486034)
chr2 (275-355)||(41809210-41809290)
chr2 (271-315)||(42419859-42419903)
chr2 (272-311)||(26143601-26143640)
chr2 (244-331)||(40158767-40158854)
chr2 (284-331)||(43065424-43065471)
chr2 (426-464)||(9477860-9477898)
chr2 (293-331)||(10285909-10285947)
[»] chr7 (13 HSPs)
chr7 (256-331)||(28076603-28076678)
chr7 (237-331)||(33894676-33894770)
chr7 (272-331)||(46082085-46082144)
chr7 (275-333)||(36537955-36538013)
chr7 (424-465)||(753353-753394)
chr7 (244-324)||(23214911-23214991)
chr7 (263-315)||(48131618-48131670)
chr7 (300-331)||(39568314-39568345)
chr7 (244-323)||(44808215-44808294)
chr7 (244-317)||(5288173-5288247)
chr7 (293-331)||(6263347-6263385)
chr7 (289-339)||(15740390-15740440)
chr7 (275-332)||(29287275-29287331)
[»] chr6 (16 HSPs)
chr6 (421-464)||(32408827-32408870)
chr6 (270-332)||(8348274-8348336)
chr6 (244-324)||(9041394-9041474)
chr6 (276-399)||(8035114-8035236)
chr6 (273-339)||(33832236-33832302)
chr6 (244-324)||(31461728-31461808)
chr6 (244-331)||(2460085-2460172)
chr6 (300-331)||(9027627-9027658)
chr6 (264-323)||(9202944-9203003)
chr6 (289-339)||(1575936-1575986)
chr6 (256-330)||(26559185-26559259)
chr6 (258-324)||(27595515-27595581)
chr6 (277-339)||(34403896-34403958)
chr6 (283-324)||(31338032-31338073)
chr6 (275-324)||(32917253-32917302)
chr6 (275-332)||(33500445-33500502)
[»] chr5 (11 HSPs)
chr5 (244-330)||(14980559-14980645)
chr5 (277-331)||(36639571-36639625)
chr5 (275-332)||(12459966-12460023)
chr5 (287-378)||(15402806-15402896)
chr5 (275-314)||(19113084-19113123)
chr5 (283-332)||(2092408-2092457)
chr5 (293-334)||(5531080-5531121)
chr5 (354-411)||(9703283-9703340)
chr5 (304-353)||(35960440-35960489)
chr5 (275-352)||(35963269-35963346)
chr5 (367-427)||(41016132-41016193)
[»] chr4 (12 HSPs)
chr4 (263-389)||(2996565-2996690)
chr4 (267-346)||(23819123-23819202)
chr4 (313-378)||(6170370-6170434)
chr4 (293-332)||(14986960-14986999)
chr4 (426-465)||(24929373-24929412)
chr4 (244-331)||(27123286-27123373)
chr4 (271-314)||(46588033-46588076)
chr4 (279-344)||(4684074-4684139)
chr4 (254-323)||(6987685-6987754)
chr4 (426-463)||(8422988-8423025)
chr4 (278-323)||(27725271-27725316)
chr4 (302-339)||(55547036-55547073)
[»] chr3 (15 HSPs)
chr3 (275-340)||(34707461-34707526)
chr3 (275-331)||(37273183-37273239)
chr3 (244-331)||(37155050-37155137)
chr3 (244-331)||(37200405-37200492)
chr3 (244-331)||(41724261-41724348)
chr3 (273-339)||(21574531-21574597)
chr3 (275-331)||(1810026-1810082)
chr3 (264-324)||(25182941-25183001)
chr3 (292-332)||(36445735-36445775)
chr3 (275-331)||(40880913-40880969)
chr3 (244-331)||(20194967-20195054)
chr3 (425-464)||(43116578-43116617)
chr3 (300-330)||(14598543-14598573)
chr3 (365-411)||(28306128-28306174)
chr3 (306-339)||(54180776-54180809)
[»] scaffold0147 (1 HSPs)
scaffold0147 (284-331)||(12678-12725)
[»] scaffold0012 (1 HSPs)
scaffold0012 (300-339)||(38633-38672)
[»] scaffold0024 (1 HSPs)
scaffold0024 (245-331)||(27625-27711)


Alignment Details
Target: chr8 (Bit Score: 860; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 860; E-Value: 0
Query Start/End: Original strand, 18 - 893
Target Start/End: Complemental strand, 9573232 - 9572357
Alignment:
Q  18 aaagcaaccagggaagtccacattatcctgtttttgaagtccaaaagactaataagaacaatgagtttaggttaaaagggaccaaaaatgatgataactc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9573232 aaagcaaccagggaagtccacattatcctgtttttgaagtccaaaagactaataagaacaatgagtttaggttaaaagggactaaaaatgatgataactc 9573133  T
Q  118 ggtatcattgaccctgcgtattgctgatacaagtggtaagcatgtgtcctttcctgtattagtttttgacacacttctttgtgccttgatattgagttga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9573132 ggtatcattgaccctgcgtattgctgatacaagtggtaagcatgtgtcctttcctgtattagtttttgacacacttctttgtgccttgatattgagttga 9573033  T
Q  218 tactgaggatttgtttgttttagctgatttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgt 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9573032 tactgagggtttgtttgttttagctgatttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgt 9572933  T
Q  318 ccataagttgtttttaccttatatctatacgctttctagaaataacctatgaaaacaacttgtaccttatatgggaacagtttgaatttattttgttatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9572932 ccataagttgtttttaccttatatctatacgctttctagaaataacctatgaaaacaacttgtaccttatatgagaacagtttgaatttattttgttatt 9572833  T
Q  418 gaaatagtttatgctataaacactcaattaagttgtttatcgaaacagtgcctaaaatgttcttgttgtgttacttgcaggtcgagtacggaatatacat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572832 gaaatagtttatgctataaacactcaattaagttgtttatcgaaacagtgcctaaaatgttcttgttgtgttacttgcaggtcgagtacggaatatacat 9572733  T
Q  518 tttctcttttaccttgatgcagatactgcagtttccgtggcctcggagatggttgaacatttggagctggcagatcatgatgtggctttcatagctgagc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572732 tttctcttttaccttgatgcagatactgcagtttccgtggcctcggagatggttgaacatttggagctggcagatcatgatgtggctttcatagctgagc 9572633  T
Q  618 ttattgattacttgatattgaaacttcttccttggtggaaaccttcacctgatcataattcaactggagaagtaagtctttgtagtggtactacaaatgt 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572632 ttattgattacttgatattgaaacttcttccttggtggaaaccttcacctgatcataattcaactggagaagtaagtctttgtagtggtactacaaatgt 9572533  T
Q  718 agattgccaaaccttaatgtcaagcccttggagttctatcttaactaatgttccctccgaaaaagttagtggtcaagatgtcttttccgagttcgataca 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572532 agattgccaaaccttaatgtcaagcccttggagttctatcttaactaatgttccctccgaaaaagttagtggtcaagatgtcttttccgagttcgataca 9572433  T
Q  818 atttctagggaaggttttgagacagctggaaagagctgtttaaacgctgataacgctacttctgagggtgcctatg 893  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9572432 atttctagggaaggttttgagacagctggaaagagctgtttaaacactgataacgctacttctgagggtgcctatg 9572357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 14949985 - 14949900
Alignment:
Q  261 tgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttatatctata 346  Q
    |||||||  |||| |||||||||||  |||| |||| ||||||||||||||||||||||||||| |||||| | ||||| ||||||    
T  14949985 tgcataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttatttctata 14949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 34849247 - 34849159
Alignment:
Q  237 ttagctgatttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataac-ttatgacatgtccataag 324  Q
    |||||| ||||||||| | ||||| ||||||| | ||||||||||||||| ||||||| | ||||| ||| ||||||||||| ||||||    
T  34849247 ttagcttatttgagcttagctactggcataagtacttttgagactgtttgggagaactaatgaaaacaactttatgacatgttcataag 34849159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 779027 - 779082
Alignment:
Q  276 gagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||| ||||||  |||||||||||||| |||||||||||||| |||||||||||||    
T  779027 gagattgtttgaaagaacttacgaaaacaacttatgacatgttcataagttgtttt 779082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 2487942 - 2488037
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttat 339  Q
    ||||||| |||||||||  |||||| | || |||||||||||| ||||||||| ||||| ||||||| |||||| || ||  |||||||| |||||    
T  2487942 atttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaacaacttataacatgttcaaaaactgtttttagcttat 2488037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 10358678 - 10358627
Alignment:
Q  280 ctgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||| |||||    
T  10358678 ctgtttgtgaaaacttatgaaaataacttatgacatgttcataagtcgtttt 10358627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 473
Target Start/End: Complemental strand, 6950257 - 6950208
Alignment:
Q  424 gtttatgctataaacactcaattaagttgtttatcgaaacagtgcctaaa 473  Q
    ||||||||||||| |||| |||||||||||||||| ||||| ||||||||    
T  6950257 gtttatgctataagcacttaattaagttgtttatctaaacaatgcctaaa 6950208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 8629561 - 8629505
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||| ||||| ||||||||| ||||| |||||||||||||  |||||||||||||    
T  8629561 tgagaccgtttgagagaacttatgaaaacaacttatgacatgatcataagttgtttt 8629505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 424 - 456
Target Start/End: Complemental strand, 29972997 - 29972965
Alignment:
Q  424 gtttatgctataaacactcaattaagttgttta 456  Q
    |||||||||||||||||||||||||||||||||    
T  29972997 gtttatgctataaacactcaattaagttgttta 29972965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 32840951 - 32841007
Alignment:
Q  276 gagactgtttgtgagaacttacgaaaataacttatgaca-tgtccataagttgtttt 331  Q
    ||||||||||| ||||||||| ||||| ||||||||||| ||| |||||||||||||    
T  32840951 gagactgtttgggagaacttatgaaaacaacttatgacattgttcataagttgtttt 32841007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 6950458 - 6950371
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    ||||||| | ||||||| ||||||  |||| ||||| |||||| |||| |||| | ||| ||| ||||||||||| ||||||||||||    
T  6950458 atttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgtttt 6950371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 339
Target Start/End: Complemental strand, 9700137 - 9700042
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttat 339  Q
    ||||||||| ||||||| ||||||  | || ||||||| |||| |||| |||  ||||  || |||||||||||||||||| |||||| |||||||    
T  9700137 atttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccataagctgttttcaccttat 9700042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 331
Target Start/End: Original strand, 25869256 - 25869287
Alignment:
Q  300 aaataacttatgacatgtccataagttgtttt 331  Q
    ||||||||||||||||||||||||||||||||    
T  25869256 aaataacttatgacatgtccataagttgtttt 25869287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 39551163 - 39551238
Alignment:
Q  264 ataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttat 339  Q
    ||||| |||| ||| |||||||| ||||| ||| | ||| ||||||||||||||||| ||| |||||||| |||||    
T  39551163 ataagcatttgtgaaactgtttgggagaatttatggaaacaacttatgacatgtccaaaagctgtttttaacttat 39551238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 33808413 - 33808344
Alignment:
Q  271 tttttgagactgtttgtgagaacttacgaaaataacttatgacat-gtccataagttgtttttaccttat 339  Q
    |||||| || |||||| ||||||||| ||||||| ||||||| || || ||||||||||||||| |||||    
T  33808413 tttttgtgattgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttat 33808344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 302 - 331
Target Start/End: Complemental strand, 38421342 - 38421313
Alignment:
Q  302 ataacttatgacatgtccataagttgtttt 331  Q
    ||||||||||||||||||||||||||||||    
T  38421342 ataacttatgacatgtccataagttgtttt 38421313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 15709975 - 15709897
Alignment:
Q  254 atctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgttttt 332  Q
    ||||||| ||||||| | ||||||||||||||| ||||||||||| ||||| ||||||||||||  ||||| |||||||    
T  15709975 atctactagcataagcacttttgagactgtttgggagaacttacggaaatagcttatgacatgtagataagctgttttt 15709897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 49692003 - 49692073
Alignment:
Q  261 tgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||||| || |||||||||||| ||||||||| ||||||| |||||||||||||||||  |||||||    
T  49692003 tgcataagaacttgtgagactgtttgagagaacttatgaaaatagcttatgacatgtccatagtttgtttt 49692073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 10199342 - 10199429
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    ||||||||| |||||||  |||||| | || ||| ||| |||| ||||||| | ||||||| |||||||||||| |||||||||||||    
T  10199342 atttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgtttt 10199429  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 304 - 411
Target Start/End: Complemental strand, 30371224 - 30371118
Alignment:
Q  304 aacttatgacatgtccataagttgtttttaccttatatctatacgctttctagaaataacctatgaaaacaacttgtaccttatatgggaacagtttgaa 403  Q
    |||| ||||||||||||||||||||||| | ||||| || ||||||| || | ||||  | |||||||||||||| || ||||||||  |||| |||||     
T  30371224 aactaatgacatgtccataagttgttttcagcttatttcaatacgctctcca-aaatgtcttatgaaaacaacttatagcttatatgaaaacaatttgag 30371126  T
Q  404 tttatttt 411  Q
    ||||||||    
T  30371125 tttatttt 30371118  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 31517674 - 31517761
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    ||||||||| || |||| ||||||| | || |||||||||||| |||||||||  |||| |||| ||||||||| |||||| ||||||    
T  31517674 atttgagcttatttactggcataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgtttt 31517761  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 6262835 - 6262773
Alignment:
Q  283 tttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttatatctat 345  Q
    |||| |||| |||| ||||||||||||||| |||||||||||||||||| | ||||| |||||    
T  6262835 tttgggagagcttatgaaaataacttatgatatgtccataagttgttttaagcttatttctat 6262773  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 244 - 346
Target Start/End: Original strand, 32515375 - 32515477
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttatatct 343  Q
    ||||||| | |||||||  |||||| | || |||||||||||| |||| |||| | ||| | | ||||||||||| |||||||||||| | |||||||||    
T  32515375 atttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatct 32515474  T
Q  344 ata 346  Q
    |||    
T  32515475 ata 32515477  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 38867799 - 38867860
Alignment:
Q  278 gactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttat 339  Q
    ||||||||| |||| |||| | ||||||||||||| |||||||| ||||||||||| |||||    
T  38867799 gactgtttgagagagcttatggaaataacttatgatatgtccatcagttgtttttagcttat 38867860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 331
Target Start/End: Complemental strand, 42336717 - 42336664
Alignment:
Q  278 gactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    ||||||||| || |||||| ||||| ||||||||||||||||| ||||||||||    
T  42336717 gactgtttgagataacttatgaaaacaacttatgacatgtccaaaagttgtttt 42336664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 4549475 - 4549563
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccat-aagttgtttt 331  Q
    ||||||| | ||||||| ||||||| |||| |||||||||||| |||| ||||   ||| ||||||||||||||| || ||||||||||    
T  4549475 atttgagattatctactggcataagcatttctgagactgtttgggagagcttatagaaacaacttatgacatgtctataaagttgtttt 4549563  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 14737660 - 14737740
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataag 324  Q
    ||||||||| || |||| | ||||| | || |||||||||||| || |||||  ||||||||||||| |||||||||||||    
T  14737660 atttgagcttatttactagaataagcacttgtgagactgtttgggaaaacttgtgaaaataacttataacatgtccataag 14737740  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 28689421 - 28689473
Alignment:
Q  279 actgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||  ||||||||||| ||| | ||||||||||||||||||||||||||    
T  28689421 actgttttagagaacttacggaaacagcttatgacatgtccataagttgtttt 28689473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 36514636 - 36514680
Alignment:
Q  271 tttttgagactgtttgtgagaacttacgaaaataacttatgacat 315  Q
    |||||||||||||| | ||||||||| ||||||||||||||||||    
T  36514636 tttttgagactgttagggagaacttatgaaaataacttatgacat 36514680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 38001701 - 38001645
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||||||| ||||||||| ||||| | |||||||| ||| |||||||||||||    
T  38001701 tgagactgtttgggagaacttatgaaaacagcttatgacctgttcataagttgtttt 38001645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 44422807 - 44422755
Alignment:
Q  272 ttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataag 324  Q
    |||||||||||| || |||| |||| ||||||| |||||||||||||||||||    
T  44422807 ttttgagactgtctgggagagcttatgaaaatagcttatgacatgtccataag 44422755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 1662709 - 1662630
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataa 323  Q
    ||||||||| ||||||| ||||||| |  |  |||||| |||| |||| |||||| ||| ||||||||||||||||||||    
T  1662709 atttgagcttatctactagcataagtacatgcgagactatttgcgagagcttacggaaacaacttatgacatgtccataa 1662630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 11211222 - 11211159
Alignment:
Q  276 gagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttat 339  Q
    ||||||| ||| || || ||| |||||||||||||  ||||||||||||||||||||| |||||    
T  11211222 gagactgattgggaaaatttatgaaaataacttatagcatgtccataagttgtttttaacttat 11211159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 12763458 - 12763383
Alignment:
Q  245 tttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtcca 320  Q
    |||||| | ||||| | ||||||| |||| | |||||||||  ||||||||||||||| | |||||||||||||||    
T  12763458 tttgagtttatctattagcataagcatttgtaagactgttttggagaacttacgaaaacagcttatgacatgtcca 12763383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 15579608 - 15579533
Alignment:
Q  254 atctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtt 329  Q
    ||||||| ||||||||| ||   |||||||||| |||| |||  | ||| ||||||||||||||||||||||||||    
T  15579608 atctactagcataagaacttgcaagactgtttgggagagcttgtggaaacaacttatgacatgtccataagttgtt 15579533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 2295232 - 2295163
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgaca 314  Q
    ||||||||| ||||||| |||||||  ||| |||||||||||| ||||||||| ||||| | |||||||||    
T  2295232 atttgagcttatctactggcataagt-tttgtgagactgtttgggagaacttatgaaaacagcttatgaca 2295163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 4699597 - 4699651
Alignment:
Q  292 acttacgaaaataacttatgacatgtccataagttgtttttaccttatatctata 346  Q
    ||||| ||||| |||||||||||||| |||||| |||||||| ||||| ||||||    
T  4699597 acttatgaaaacaacttatgacatgttcataagctgtttttagcttatttctata 4699651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 5741742 - 5741673
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgaca 314  Q
    ||||||||| | |||||||||||||  || |||| |||||||| ||||||||| ||||| |||||||||||    
T  5741742 atttgagcttaactacttgcataagttttgttga-actgtttgggagaacttatgaaaacaacttatgaca 5741673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 19390028 - 19389950
Alignment:
Q  254 atctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgttttt 332  Q
    |||||||  |||||| | || ||| |||||||| |||||| || ||||| ||||||||| |||| ||||||||||||||    
T  19390028 atctactaacataagtagttgtgacactgtttgggagaacgtatgaaaaaaacttatgatatgttcataagttgttttt 19389950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 21002291 - 21002249
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttg 286  Q
    ||||||||| ||||||||||||||||| || ||||||||||||    
T  21002291 atttgagcttatctacttgcataagaacttgtgagactgtttg 21002249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 40413993 - 40414043
Alignment:
Q  281 tgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||| ||||||||||||||  |||| |||| ||||||||||||||||||    
T  40413993 tgtttgggagaacttacgaaagcaactgatgaaatgtccataagttgtttt 40414043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 11639368 - 11639445
Alignment:
Q  262 gcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttat 339  Q
    ||||||||| |||||||||  |||   ||| |||| ||||| | ||||||||||||||||||| |||||||| |||||    
T  11639368 gcataagaacttttgagacaatttagaagagcttatgaaaacagcttatgacatgtccataagctgtttttagcttat 11639445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 27963366 - 27963399
Alignment:
Q  306 cttatgacatgtccataagttgtttttaccttat 339  Q
    |||||||||||||||||||||||||||| |||||    
T  27963366 cttatgacatgtccataagttgtttttagcttat 27963399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 35058400 - 35058453
Alignment:
Q  278 gactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    ||||||||| |||||||||| |||||||||||| |||||| | |||| ||||||    
T  35058400 gactgtttgggagaacttactaaaataacttattacatgttcgtaagctgtttt 35058453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 40304023 - 40304092
Alignment:
Q  254 atctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataa 323  Q
    ||||||| ||||||| || | ||||| |||||| || |||||||||| ||| ||||||||||| ||||||    
T  40304023 atctactggcataagcatgtctgagattgtttgggataacttacgaatatagcttatgacatgcccataa 40304092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 47498799 - 47498868
Alignment:
Q  271 tttttgagactgtttgtgagaacttacgaaaataacttatgacat-gtccataagttgtttttaccttat 339  Q
    |||||| || |||||| ||||||||| ||||||| ||||||| || || ||||||||||||||| |||||    
T  47498799 tttttgtgattgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttat 47498868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 787458 - 787381
Alignment:
Q  254 atctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    ||||||| ||||||| | || ||| |||||||||||||||||| ||||| | ||||||||||||||||||| ||||||    
T  787458 atctactggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagctgtttt 787381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 44606078 - 44606131
Alignment:
Q  278 gactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||||  |||||||| ||||| ||||||||||||||||||||||||||||    
T  44606078 gactgtttggaagaacttatgaaaacaacttatgacatgtccataagttgtttt 44606131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 245 - 331
Target Start/End: Original strand, 28677594 - 28677680
Alignment:
Q  245 tttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||| || |||||||||||| | |  | |||||||||| ||||||||| ||||| | |||||||||| | |||||||||||||    
T  28677594 tttgagcttatttacttgcataagtactgctaagactgtttgggagaacttatgaaaacagcttatgacattttcataagttgtttt 28677680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 1318371 - 1318296
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtcca 320  Q
    ||||||| | ||||||| ||||||| | || ||||||||||||||||| |||| ||||| | |||||||||||||||    
T  1318371 atttgagattatctact-gcataagcacttgtgagactgtttgtgagagcttatgaaaacatcttatgacatgtcca 1318296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 28803464 - 28803544
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataag 324  Q
    ||||||||| ||||||  ||||||| |  | |||||||||||| |||||| || | ||| |||||||||||||||||||||    
T  28803464 atttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttatgacatgtccataag 28803544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 35486034 - 35485966
Alignment:
Q  263 cataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||| || |||||||||||| |||||||||| |||  ||||||||| |||| |||||| ||||||    
T  35486034 cataagaacttgtgagactgtttgagagaacttactaaagcaacttatgatatgttcataagctgtttt 35485966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 41809210 - 41809290
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttatatctatacgctttcta 355  Q
    |||||||| |||| ||| |||  | ||| |||||||||||||| ||||||||||||||| ||||| || ||| ||||||||    
T  41809210 tgagactgattgtaagagcttgtggaaacaacttatgacatgttcataagttgtttttagcttatttccataagctttcta 41809290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 42419903 - 42419859
Alignment:
Q  271 tttttgagactgtttgtgagaacttacgaaaataacttatgacat 315  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||    
T  42419903 tttttgagactgtttgggagaacttacgaaaacagcttatgacat 42419859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 26143601 - 26143640
Alignment:
Q  272 ttttgagactgtttgtgagaacttacgaaaataacttatg 311  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  26143601 ttttgagactgtttgggagaacttacgaaaacaacttatg 26143640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 40158854 - 40158767
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    ||||||||  |||||||  |||||||| || |||||||| ||| | ||||||| ||||| | ||||||||||||  ||||||||||||    
T  40158854 atttgagcatatctactgacataagaacttgtgagactgattgggggaacttatgaaaacagcttatgacatgtttataagttgtttt 40158767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 43065424 - 43065471
Alignment:
Q  284 ttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||| |||| ||||| |||||||||||||||||||| |||||||    
T  43065424 ttgtgagagcttatgaaaacaacttatgacatgtccataaattgtttt 43065471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 464
Target Start/End: Complemental strand, 9477898 - 9477860
Alignment:
Q  426 ttatgctataaacactcaattaagttgtttatcgaaaca 464  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  9477898 ttatgctataaacacttaattaagttgtttatccaaaca 9477860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 10285947 - 10285909
Alignment:
Q  293 cttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  10285947 cttatgaaaataacttatgacatgtccataagctgtttt 10285909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 28076678 - 28076603
Alignment:
Q  256 ctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    ||||| ||||||||| || |||| ||||||| ||||| ||||| ||| |||| |||||||||||||||||||||||    
T  28076678 ctactggcataagaacttgtgagcctgtttgagagaatttacggaaacaactaatgacatgtccataagttgtttt 28076603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 33894770 - 33894676
Alignment:
Q  237 ttagctgatttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||| ||||||||| ||| | |  |||||| | || ||||||||||||||||| |||| ||||| | | ||||||||||||||||||||||||    
T  33894770 ttagcttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgtttt 33894676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 46082144 - 46082085
Alignment:
Q  272 ttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||||||||  ||||| |||| ||||| ||||||||||||| ||||||||||||||    
T  46082144 ttttgagactgttaatgagagcttatgaaaacaacttatgacatgaccataagttgtttt 46082085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 36538013 - 36537955
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgttttta 333  Q
    ||||| |||||| ||||||||| | ||| |||||||||||||| |||||||||||||||    
T  36538013 tgagattgtttgagagaacttatggaaacaacttatgacatgttcataagttgttttta 36537955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 465
Target Start/End: Original strand, 753353 - 753394
Alignment:
Q  424 gtttatgctataaacactcaattaagttgtttatcgaaacag 465  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  753353 gtttatgctataaacacttaattaagttgtttatccaaacag 753394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 23214991 - 23214911
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataag 324  Q
    |||||| || ||||||| ||||||  | || |||||||||||| ||||| ||| ||||| |||||||||||| ||||||||    
T  23214991 atttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacatttccataag 23214911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 48131670 - 48131618
Alignment:
Q  263 cataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacat 315  Q
    |||||| |||| ||||||||||||  ||||||||||||||||| |||||||||    
T  48131670 cataagcatttatgagactgtttggaagaacttacgaaaataagttatgacat 48131618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 331
Target Start/End: Original strand, 39568314 - 39568345
Alignment:
Q  300 aaataacttatgacatgtccataagttgtttt 331  Q
    ||||||||||||||||||||||||||||||||    
T  39568314 aaataacttatgacatgtccataagttgtttt 39568345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 44808294 - 44808215
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataa 323  Q
    ||||||||| || || | ||||||| | || | ||||||||||  ||| |||| ||||||||||||||||||||||||||    
T  44808294 atttgagcttatttattagcataagcagttgtcagactgtttgatagaccttatgaaaataacttatgacatgtccataa 44808215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 5288247 - 5288173
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaactt-acgaaaataacttatgacatgt 317  Q
    ||||||||| ||||||| ||||||| | || |||||||||||| |||||||| |  |||| ||||||||||||||    
T  5288247 atttgagctaatctactagcataagcacttatgagactgtttgggagaacttaaaaaaaacaacttatgacatgt 5288173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 6263347 - 6263385
Alignment:
Q  293 cttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  6263347 cttacgcaaataacttatgagatgtccataagttgtttt 6263385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 15740390 - 15740440
Alignment:
Q  289 agaacttacgaaaataacttatgacatgtccataagttgtttttaccttat 339  Q
    |||||||| ||||| |||||||||||||| |||||| |||||||| |||||    
T  15740390 agaacttatgaaaacaacttatgacatgttcataagctgtttttaacttat 15740440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 29287331 - 29287275
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgttttt 332  Q
    ||||||| ||||| ||| |||| ||||||| |||||||||||||||||| ||||||||    
T  29287331 tgagactatttgt-agagcttatgaaaatagcttatgacatgtccataaattgttttt 29287275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 421 - 464
Target Start/End: Complemental strand, 32408870 - 32408827
Alignment:
Q  421 atagtttatgctataaacactcaattaagttgtttatcgaaaca 464  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  32408870 atagtttatgctataaacacttaattaagttgtttatcgaaaca 32408827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 8348336 - 8348274
Alignment:
Q  270 atttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgttttt 332  Q
    |||||||| |||||||| |||| |||||||||| ||||||| ||||| |||||||||||||||    
T  8348336 atttttgatactgtttgagagagcttacgaaaacaacttataacatgaccataagttgttttt 8348274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 9041394 - 9041474
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataag 324  Q
    ||||||||| ||| ||| ||||||| |||| | ||| |||||  |||| |||||||||||| |||||||||||||||||||    
T  9041394 atttgagcttatcaactagcataagcatttgtcagaatgttttggagagcttacgaaaatagcttatgacatgtccataag 9041474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 276 - 399
Target Start/End: Original strand, 8035114 - 8035236
Alignment:
Q  276 gagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttatatctatacgctttctagaaataacctatgaaaacaa 375  Q
    |||||| |||| ||||||||| ||||| |||||||||||||  ||||| ||||||| | ||||| |   || |||||||||  ||||| |||||||||||    
T  8035114 gagactatttgggagaacttaagaaaacaacttatgacatggtcataacttgttttcaacttattttcgtaagctttctag-gataacttatgaaaacaa 8035212  T
Q  376 cttgtaccttatatgggaacagtt 399  Q
    ||| || ||||||||  |||||||    
T  8035213 cttctagcttatatgaaaacagtt 8035236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 33832236 - 33832302
Alignment:
Q  273 tttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttat 339  Q
    |||||| ||||||  ||||||||| ||||| ||||||||||||||  |||||||||||||| |||||    
T  33832236 tttgagtctgtttaagagaacttatgaaaacaacttatgacatgtttataagttgtttttagcttat 33832302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 31461808 - 31461728
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataag 324  Q
    ||||||||| ||||| ||||||||| | || |||||||||| |  ||| |||||||||||| ||||||||| |||| ||||    
T  31461808 atttgagcttatctatttgcataagtacttgtgagactgttcgcaagagcttacgaaaatagcttatgacaagtccgtaag 31461728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 2460085 - 2460172
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    ||||||||| ||  ||| ||||||| | || |||||||||||| |||| |||| | ||| |||||||||||||||  |||||||||||    
T  2460085 atttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgtttt 2460172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 331
Target Start/End: Complemental strand, 9027658 - 9027627
Alignment:
Q  300 aaataacttatgacatgtccataagttgtttt 331  Q
    ||||||||||||||||||||||||||||||||    
T  9027658 aaataacttatgacatgtccataagttgtttt 9027627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 9202944 - 9203003
Alignment:
Q  264 ataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataa 323  Q
    ||||||| || |||||||||||| ||||||||| |||||||||| ||| ||||| |||||    
T  9202944 ataagaaattgtgagactgtttgagagaacttatgaaaataactcatggcatgttcataa 9203003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 1575986 - 1575936
Alignment:
Q  289 agaacttacgaaaataacttatgacatgtccataagttgtttttaccttat 339  Q
    |||||||| ||||| |||||||||||||| |||||| |||||||| |||||    
T  1575986 agaacttatgaaaacaacttatgacatgttcataagctgtttttaacttat 1575936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 26559185 - 26559259
Alignment:
Q  256 ctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgttt 330  Q
    ||||| ||||||| |||| ||||||||||||  |||||||| ||||| ||||||||| |||| || ||| |||||    
T  26559185 ctactggcataagcatttgtgagactgtttggaagaacttatgaaaacaacttatgatatgttcacaagctgttt 26559259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 27595515 - 27595581
Alignment:
Q  258 acttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataag 324  Q
    ||||||||||| | || |||||||||||| ||||| ||| | ||| |||||||||||||| ||||||    
T  27595515 acttgcataagcacttatgagactgtttgggagaatttatggaaacaacttatgacatgttcataag 27595581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 34403958 - 34403896
Alignment:
Q  277 agactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttat 339  Q
    |||||||||  ||||| ||| ||||| |||||||||||||| |||||| |||||| |||||||    
T  34403958 agactgtttaggagaagttaagaaaacaacttatgacatgttcataaggtgttttcaccttat 34403896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 31338073 - 31338032
Alignment:
Q  283 tttgtgagaacttacgaaaataacttatgacatgtccataag 324  Q
    ||||||||| |||| ||||| |||||||||||||||||||||    
T  31338073 tttgtgagagcttatgaaaacaacttatgacatgtccataag 31338032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 32917302 - 32917253
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgacatgtccataag 324  Q
    |||||||||||| |||| |||| | ||| |||||||||||||||||||||    
T  32917302 tgagactgtttgggagagcttatggaaacaacttatgacatgtccataag 32917253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 33500445 - 33500502
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgttttt 332  Q
    |||||||||||| | || |||| ||||| || ||||||||||| ||||||||||||||    
T  33500445 tgagactgtttgagggagcttatgaaaacaatttatgacatgtgcataagttgttttt 33500502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 244 - 330
Target Start/End: Complemental strand, 14980645 - 14980559
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgttt 330  Q
    ||||||||| ||||||| ||||||| | | | ||||||||||| |||| ||||  ||||| ||||||||||||| ||||||||||||    
T  14980645 atttgagcttatctactggcataagcactatagagactgtttgagagagcttataaaaatgacttatgacatgtacataagttgttt 14980559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 36639625 - 36639571
Alignment:
Q  277 agactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||||| ||||||||||||||||  |||||||| |||||||||||||||||    
T  36639625 agactgtttgagagaacttacgaaaattgcttatgacgtgtccataagttgtttt 36639571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 12459966 - 12460023
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgttttt 332  Q
    |||||||||||| |||||| || ||||| |||||||||||||| |||| |||||||||    
T  12459966 tgagactgtttgggagaacctatgaaaacaacttatgacatgttcatatgttgttttt 12460023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 378
Target Start/End: Original strand, 15402806 - 15402896
Alignment:
Q  287 tgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttatatctatacgctttctagaaataacctatgaaaacaactt 378  Q
    |||||||||||||||| || |||||| |||| ||||||||||||| | || || |||||||| | |||| |||||   ||||||||||||||    
T  15402806 tgagaacttacgaaaacaaattatgatatgttcataagttgttttcagctaatttctatacgttctcta-aaataggttatgaaaacaactt 15402896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 314
Target Start/End: Original strand, 19113084 - 19113123
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgaca 314  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  19113084 tgagactgtttgggagagcttacgaaaataacttatgaca 19113123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 332
Target Start/End: Complemental strand, 2092457 - 2092408
Alignment:
Q  283 tttgtgagaacttacgaaaataacttatgacatgtccataagttgttttt 332  Q
    |||||||||| ||| | ||||| ||||||||||||||||||| |||||||    
T  2092457 tttgtgagaagttatggaaatagcttatgacatgtccataagctgttttt 2092408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 5531121 - 5531080
Alignment:
Q  293 cttacgaaaataacttatgacatgtccataagttgtttttac 334  Q
    |||| ||||| ||||||||| |||||||||||||||||||||    
T  5531121 cttatgaaaacaacttatgatatgtccataagttgtttttac 5531080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 9703283 - 9703340
Alignment:
Q  354 tagaaataacctatgaaaacaacttgtaccttatatgggaacagtttgaatttatttt 411  Q
    |||||||||| ||||||||||||||||| ||||||||  |  ||||||| ||||||||    
T  9703283 tagaaataacttatgaaaacaacttgtagcttatatgaaatgagtttgactttatttt 9703340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 35960489 - 35960440
Alignment:
Q  304 aacttatgacatgtccataagttgtttttaccttatatctatacgctttc 353  Q
    |||||| |||||||||||||| |||||||| ||||| ||| |||||||||    
T  35960489 aacttacgacatgtccataagatgtttttagcttatttctttacgctttc 35960440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 352
Target Start/End: Complemental strand, 35963346 - 35963269
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttatatctatacgcttt 352  Q
    |||| ||||||  ||||||||| | ||||| | |||||||||||||||||||||||| | ||||| || ||| |||||    
T  35963346 tgagtctgtttaggagaacttatggaaatagcgtatgacatgtccataagttgttttcagcttatttccataagcttt 35963269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 427
Target Start/End: Complemental strand, 41016193 - 41016132
Alignment:
Q  367 tgaaaacaacttgtaccttatatgggaacagtttgaattta-ttttgttattgaaatagttt 427  Q
    |||||||||||| || ||||||||  ||||||||||||||| ||||| ||| ||||||||||    
T  41016193 tgaaaacaacttatagcttatatgaaaacagtttgaatttatttttgctatagaaatagttt 41016132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 263 - 389
Target Start/End: Complemental strand, 2996690 - 2996565
Alignment:
Q  263 cataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttatatctatacgctttctagaaataa 362  Q
    |||||| | ||||||||||||||| |||| |||| ||||| ||||||||||||||||||||| | |||| | ||||| |  ||||||| || | | |||     
T  2996690 cataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctcca-agatag 2996592  T
Q  363 cctatgaaaacaacttgtaccttatat 389  Q
    | |||||||||||||| || |||||||    
T  2996591 cttatgaaaacaacttataacttatat 2996565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 23819202 - 23819123
Alignment:
Q  267 agaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttatatctata 346  Q
    ||||||| ||||||||||||  |||  ||| ||||| | |||||||||||||||||||||||||| | ||||| ||||||    
T  23819202 agaatttgtgagactgtttggaagagtttaagaaaacagcttatgacatgtccataagttgttttcatcttatttctata 23819123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 378
Target Start/End: Complemental strand, 6170434 - 6170370
Alignment:
Q  313 catgtccataagttgtttttaccttatatctatacgctttctagaaataacctatgaaaacaactt 378  Q
    ||||||||||| || |||||| ||||| |||||| ||||||||| |||||| ||||||||||||||    
T  6170434 catgtccataaattatttttaacttatttctatatgctttctag-aataacttatgaaaacaactt 6170370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 14986960 - 14986999
Alignment:
Q  293 cttacgaaaataacttatgacatgtccataagttgttttt 332  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  14986960 cttatgaaaataacttatgacatgtccataagttggtttt 14986999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 465
Target Start/End: Complemental strand, 24929412 - 24929373
Alignment:
Q  426 ttatgctataaacactcaattaagttgtttatcgaaacag 465  Q
    ||||| ||||||||||||||||||||||||||| ||||||    
T  24929412 ttatgttataaacactcaattaagttgtttatccaaacag 24929373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 27123286 - 27123373
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    ||||||||| ||  ||| ||||||| | || |||||||||||| |||| |||| | ||| |||||||||||||||  |||||||||||    
T  27123286 atttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgtttt 27123373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 46588033 - 46588076
Alignment:
Q  271 tttttgagactgtttgtgagaacttacgaaaataacttatgaca 314  Q
    |||||||| |||||||  ||||||||||||||||||||||||||    
T  46588033 tttttgagcctgtttggtagaacttacgaaaataacttatgaca 46588076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 4684074 - 4684139
Alignment:
Q  279 actgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttatatcta 344  Q
    |||||||| |||| ||||  ||||||||||| ||||||||| |||| |||||||| ||||| ||||    
T  4684074 actgtttgggagagcttagtaaaataacttaagacatgtccgtaagctgtttttagcttatttcta 4684139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 6987685 - 6987754
Alignment:
Q  254 atctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataa 323  Q
    ||||||| |||||||  ||| |||||||||||| |||| |||| | | | ||||||||||||||||||||    
T  6987685 atctactagcataagtgtttgtgagactgtttgggagagcttatggatacaacttatgacatgtccataa 6987754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 463
Target Start/End: Original strand, 8422988 - 8423025
Alignment:
Q  426 ttatgctataaacactcaattaagttgtttatcgaaac 463  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  8422988 ttatgctataaacacttaattaagttgtttatccaaac 8423025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 27725316 - 27725271
Alignment:
Q  278 gactgtttgtgagaacttacgaaaataacttatgacatgtccataa 323  Q
    ||||||||| |||| |||| | ||||||||||||||||||||||||    
T  27725316 gactgtttgagagagcttatggaaataacttatgacatgtccataa 27725271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 55547036 - 55547073
Alignment:
Q  302 ataacttatgacatgtccataagttgtttttaccttat 339  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  55547036 ataacttatgacatgtctataagttgtttttagcttat 55547073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 34707461 - 34707526
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttata 340  Q
    |||||||||||| ||||||||  ||||| ||||| |||||||||||||||||||||| | ||||||    
T  34707461 tgagactgtttgagagaacttttgaaaacaacttgtgacatgtccataagttgttttcaacttata 34707526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 37273239 - 37273183
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||||||| |||| |||| | ||| ||||||||||||||||||||||||||||    
T  37273239 tgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgtttt 37273183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 37155137 - 37155050
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    ||||||||| |||||||| |||||  |||| |||||||||| |  |||  ||| | ||||||||||| ||||||||||||||||||||    
T  37155137 atttgagctaatctacttacataaacatttgtgagactgttcgaaagagtttatggaaataacttattacatgtccataagttgtttt 37155050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 37200492 - 37200405
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    ||||||||| |||||||| |||||  |||| |||||||||| |  |||  ||| | ||||||||||| ||||||||||||||||||||    
T  37200492 atttgagctaatctacttacataaacatttgtgagactgttcgaaagagtttatggaaataacttattacatgtccataagttgtttt 37200405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 41724348 - 41724261
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||| || |||||||  |||||| | || | |||| |||||||| |||||| | ||| ||||||||||||||||||||||||||||    
T  41724348 atttgaacttatctactgacataagtacttgtcagacagtttgtgaaaacttatggaaacaacttatgacatgtccataagttgtttt 41724261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 21574597 - 21574531
Alignment:
Q  273 tttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttat 339  Q
    |||||||||||||| |||| |||| ||||| |||||||||||||| |||||| || ||||| |||||    
T  21574597 tttgagactgtttgggagagcttatgaaaacaacttatgacatgttcataagctgcttttagcttat 21574531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 1810082 - 1810026
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    ||||||| |||| |||| |||||| ||| |||||||||||||||||| |||||||||    
T  1810082 tgagactatttgagagagcttacggaaacaacttatgacatgtccatgagttgtttt 1810026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 25182941 - 25183001
Alignment:
Q  264 ataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataag 324  Q
    ||||||| || |||||||||||| |||| |||| ||||| |||||||||||| ||||||||    
T  25182941 ataagaacttgtgagactgtttgagagagcttatgaaaacaacttatgacatatccataag 25183001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 36445775 - 36445735
Alignment:
Q  292 acttacgaaaataacttatgacatgtccataagttgttttt 332  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  36445775 acttacgaaaatagcttatgacatgtcaataagttgttttt 36445735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 40880913 - 40880969
Alignment:
Q  275 tgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||||||| |||| |||| ||||| ||||||||||||| || |||||||||||    
T  40880913 tgagactgtttgagagagcttatgaaaacaacttatgacatgaccgtaagttgtttt 40880969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 20194967 - 20195054
Alignment:
Q  244 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||| || |||| |||||||||| | || ||||||||||||||||| |||| ||||| |  ||||||||| | || ||||||||||    
T  20194967 atttgaacttatcttcttgcataagcagttgtgagactgtttgtgagagcttatgaaaacagtttatgacatattcaaaagttgtttt 20195054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 43116578 - 43116617
Alignment:
Q  425 tttatgctataaacactcaattaagttgtttatcgaaaca 464  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  43116578 tttatgctataaacactaaattaagttgtttatccaaaca 43116617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 14598543 - 14598573
Alignment:
Q  300 aaataacttatgacatgtccataagttgttt 330  Q
    |||||||||||||||||||||||||||||||    
T  14598543 aaataacttatgacatgtccataagttgttt 14598573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 28306174 - 28306128
Alignment:
Q  365 tatgaaaacaacttgtaccttatatgggaacagtttgaatttatttt 411  Q
    ||||||||||||||||| ||||||||  |||||||||| ||||||||    
T  28306174 tatgaaaacaacttgtaacttatatgaaaacagtttgactttatttt 28306128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 54180776 - 54180809
Alignment:
Q  306 cttatgacatgtccataagttgtttttaccttat 339  Q
    |||||||||||||||||||||||||||| |||||    
T  54180776 cttatgacatgtccataagttgtttttagcttat 54180809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 12678 - 12725
Alignment:
Q  284 ttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||| |||| | ||| ||||||||||||||||||||||||||||    
T  12678 ttgtgagaccttatggaaacaacttatgacatgtccataagttgtttt 12725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 38672 - 38633
Alignment:
Q  300 aaataacttatgacatgtccataagttgtttttaccttat 339  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  38672 aaataacttatgacatgtccataagttgtttctaacttat 38633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 245 - 331
Target Start/End: Complemental strand, 27711 - 27625
Alignment:
Q  245 tttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttt 331  Q
    |||||||| |||||||  |||| | | || |||||||||||| |||| |||| | ||||| ||||||||||| | ||||||||||||    
T  27711 tttgagctgatctactgacatatgtacttctgagactgtttgggagagcttatggaaatagcttatgacatggctataagttgtttt 27625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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