View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_20 (Length: 425)
Name: NF12929_low_20
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_20 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 410
Target Start/End: Original strand, 7049 - 7445
Alignment:
| Q |
13 |
aaaatataaatctcgtaattttctggttcagaatgatgaaaaaggaaccaattgagataaatgaaatactatagactcaataatagnnnnnnnnnnnnnn |
112 |
Q |
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| T |
7049 |
aaaatataaatctcgttat---ctggttcagaatgatgaaaaaggaaccaattgagataaatgaaatactatagactcaataatagaaaaaaaattaaaa |
7145 |
T |
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| Q |
113 |
ntgtttatgaatttgatagactcaaatataaataaagagcggtgtgttaaggagtatgttggatgtagcatgaaacacttgtgtaataatag-caaagag |
211 |
Q |
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| T |
7146 |
atgattatgaatttgatagactcaaatataaataaagagcggtttgttaaggagtatgttggatgtagcatgaaacacttgtgtaataataggcaaagag |
7245 |
T |
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| Q |
212 |
caaaatcacatttgacagaaaacatgatcgttgtggccggaaatagatggcttctttcatcaacattgttttgtttttgtagaaaaagtttattcttttt |
311 |
Q |
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| T |
7246 |
caaaatcacatttgacagaaaacatgatcgttgtggccggaaatagatggcttctttcatcaacattgttttgtttttgtagaaaaagtttattcttttt |
7345 |
T |
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| Q |
312 |
aaagagcatctccaccaaggattattgagatgaaagttttctaaagcgagttatttagattttgttca-nnnnnnncgaaggaagattatgttcattatg |
410 |
Q |
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| T |
7346 |
aaagagcatctccaccaaggattattgagatgaaagttttctaaagcgagttatttagattttgttcattttttttcgaaggaagattatgttcattatg |
7445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 11053 - 11094
Alignment:
| Q |
32 |
tttctggttc-agaatgatgaaaaaggaaccaattgagataa |
72 |
Q |
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| T |
11053 |
tttctggttccagaatgatgaaaaaggcaccaattgagataa |
11094 |
T |
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