View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_22 (Length: 415)
Name: NF12929_low_22
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 5 - 415
Target Start/End: Complemental strand, 38423365 - 38422955
Alignment:
| Q |
5 |
ccaatcaatcccactacttcaatgtttaaaacttctccatcaagttcaaaccaccaaacatgaccatattatgaggattatttattattcataaataaaa |
104 |
Q |
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| T |
38423365 |
ccaatcaatcccactacttcaatgtttaaaacttctccatcaagttcaaaccaccaaacatgaccatattatgaggattatttattattcataaataaaa |
38423266 |
T |
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| Q |
105 |
cacttgtttttcaactatattcctaattttctttttctctatcccattnnnnnnnccttgagtactaagaaaagccaacgtggaaccttccttttctcct |
204 |
Q |
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| T |
38423265 |
cacttgtttttcaactatattcctaattttctttttctctatcccattaaaaaaaccttgagtactaagaaaagccaacgtggaaccttccttttctcct |
38423166 |
T |
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| Q |
205 |
taatataaaccccaacccatctcttagttgcaaacacaaagcaaagttgattatttgagtaattaatcaaaggaaaaaacggaatgtcaattgttgggaa |
304 |
Q |
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| T |
38423165 |
taatataaaccccaacccatctcttagttgcaaacacaaagcaaagttgattatttgagtaattaatcaaaggaaaaaacgtaatgtcaattgttgggaa |
38423066 |
T |
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| Q |
305 |
gaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatcatcatcattcaagtggaacagacttactttgcctgtt |
404 |
Q |
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| T |
38423065 |
gaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatcatcatcattcaagtggaacacacttactttgcctgtt |
38422966 |
T |
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| Q |
405 |
tcattcatgga |
415 |
Q |
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| T |
38422965 |
tcattcatgga |
38422955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 268 - 415
Target Start/End: Complemental strand, 38413218 - 38413068
Alignment:
| Q |
268 |
taatcaaaggaaaaaacggaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatc |
367 |
Q |
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||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
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| T |
38413218 |
taatcaaagagaaaaacggaatgtcaatggttgagaagaaaagatcgttgttgaagaggctgaagaaggaaacattgaggttgaagtttttgtggcaatc |
38413119 |
T |
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| Q |
368 |
atcatc---attcaagtggaacagacttactttgcctgtttcattcatgga |
415 |
Q |
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| T |
38413118 |
ttcatcaggattcaggtggaacagacttacttcgccggtttcattcatgga |
38413068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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