View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_23 (Length: 405)
Name: NF12929_low_23
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 389069 - 389455
Alignment:
| Q |
1 |
tagaaagtaagcttccatacaaagcaatatataaagggtcaactttattcaacaagatttaattaactaatgattataaccattttgaaacatttgcata |
100 |
Q |
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| T |
389069 |
tagaaactaagcttccatacaaagcaatatataaagggtcaactttattcaacaagatttaattaactaatgattataaccattttgaaacatttgcata |
389168 |
T |
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| Q |
101 |
tgattaataagactaagctccaagctaaacaaatattatttaatagtatggaagaaattgaaaagtggataagttaagaaatcccttgttgacaaattaa |
200 |
Q |
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| T |
389169 |
tgattaataagactaagctccaagctaaacaaatattatttaatagtatggaagaaattgaaaagtggataagttaagaaatcccttgttgacaaattaa |
389268 |
T |
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| Q |
201 |
tctgtgtcaccttccaatctagctttatatatgtttgaagtaacttaaagaacaaagaaagatgaattcaagagagtgtgaagttgagcaatagaatctt |
300 |
Q |
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| T |
389269 |
tctgtgtcaccttccaatctagctttatatatgtttgaagtaacttaaagaacaaagaaagatgaattgaagagagtgcgaagttgagcaatagaatctt |
389368 |
T |
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| Q |
301 |
gcaggtaactgttccatgataaagtgggaattctagtctgcagttgttttctcttgaagtagaattaatataacaagtagttacatc |
387 |
Q |
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| T |
389369 |
gcaggtaactgttccatgataaagtgggaattctagtctgcagttgttttctcttgaagtagaattaatataacaagtagttacatc |
389455 |
T |
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