View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12929_low_27 (Length: 377)

Name: NF12929_low_27
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12929_low_27
NF12929_low_27
[»] chr4 (7 HSPs)
chr4 (20-364)||(24065128-24065471)
chr4 (32-116)||(30251438-30251522)
chr4 (18-86)||(48309649-48309717)
chr4 (38-116)||(23012387-23012465)
chr4 (23-106)||(45068156-45068239)
chr4 (25-71)||(50655108-50655154)
chr4 (27-71)||(4866794-4866838)
[»] chr1 (9 HSPs)
chr1 (17-116)||(21926589-21926687)
chr1 (17-87)||(25410598-25410668)
chr1 (18-102)||(51871187-51871271)
chr1 (17-116)||(44503980-44504079)
chr1 (17-97)||(52372659-52372739)
chr1 (22-85)||(13297595-13297658)
chr1 (25-118)||(9644339-9644432)
chr1 (25-112)||(40799625-40799712)
chr1 (18-86)||(15274347-15274415)
[»] chr3 (7 HSPs)
chr3 (25-116)||(34213118-34213209)
chr3 (22-116)||(26982061-26982155)
chr3 (28-86)||(2833336-2833394)
chr3 (18-86)||(1045398-1045466)
chr3 (22-101)||(4778017-4778096)
chr3 (39-80)||(1762039-1762080)
chr3 (22-86)||(41640824-41640888)
[»] chr2 (4 HSPs)
chr2 (18-86)||(10994432-10994500)
chr2 (18-86)||(29682701-29682769)
chr2 (27-113)||(41074597-41074683)
chr2 (22-85)||(43411515-43411578)
[»] chr7 (6 HSPs)
chr7 (48-116)||(23176958-23177026)
chr7 (26-97)||(46028474-46028545)
chr7 (25-101)||(26557857-26557933)
chr7 (25-97)||(33888605-33888677)
chr7 (38-101)||(12258360-12258423)
chr7 (25-87)||(40188220-40188282)
[»] chr5 (3 HSPs)
chr5 (22-90)||(41650521-41650589)
chr5 (25-87)||(27639482-27639544)
chr5 (43-113)||(3465354-3465424)
[»] chr8 (8 HSPs)
chr8 (22-87)||(42032732-42032797)
chr8 (38-113)||(41926993-41927068)
chr8 (22-113)||(42241259-42241350)
chr8 (18-112)||(2074829-2074923)
chr8 (26-112)||(24604811-24604897)
chr8 (48-101)||(7656857-7656910)
chr8 (39-99)||(34152066-34152126)
chr8 (22-86)||(36650460-36650524)
[»] scaffold0042 (1 HSPs)
scaffold0042 (25-85)||(83251-83311)
[»] chr6 (2 HSPs)
chr6 (18-86)||(9755691-9755759)
chr6 (25-118)||(51962-52055)
[»] scaffold0329 (1 HSPs)
scaffold0329 (22-88)||(18456-18522)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 24065128 - 24065471
Alignment:
Q  20 aacaggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccagagaagaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||| |||||||||||||  |||||||    
T  24065128 aacaggaactagcagggtacttagccatgaaccacttccaggttaagagtttcactctatccaccacaggctcctcatggagagtgccaccgaagaagaa 24065227  T
Q  120 aaattatttcttaaaacaataaactcattttattttacaataataaactcaatttctttgataaacattannnnnnnnagcaaattctttgatgaacaca 219  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||        ||||||||||||| ||| ||||    
T  24065228 aaattatttcttaaaacaataaacttattttattttacaataataaactcaatttctttggtaaacattattttttttagcaaattctttggtga-caca 24065326  T
Q  220 aagattactaaccacttgccaattaattatcccccctcctttgtcacaattaatgttaatttcataatgaagaaaacggtgagatggaaattaatcattg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24065327 aagattactaaccacttgccaattaattatcccccctcctttgtcacaattaatgttaatttcataatgaagaaaacggtgagatggaaattaatcattg 24065426  T
Q  320 tttaaggaatatattgtcttcttttgcatcatatcatgtatatat 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24065427 tttaaggaatatattgtcttcttttgcatcatatcatgtatatat 24065471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 30251438 - 30251522
Alignment:
Q  32 cagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccagagaa 116  Q
    ||||| ||||||||| ||||||||| || || |||||||||||||||||||||||| |||||||||||||||  ||| |||||||    
T  30251438 cagggcacttagccaggaaccactttcaagccaagagtttcactctatccaccacagactcctcacggagagccccaacagagaa 30251522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 48309649 - 48309717
Alignment:
Q  18 agaacaggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccac 86  Q
    ||||||||||||||||||  ||||||||  |||| ||||||| ||||||||||||||||||||||||||    
T  48309649 agaacaggaactagcaggaaacttagcccggaacgacttccaagctaagagtttcactctatccaccac 48309717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 23012387 - 23012465
Alignment:
Q  38 acttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccagagaa 116  Q
    |||||||||||||||| |||||  |||||||||||||||||||||||||   |||||||| |||||  |||||||||||    
T  23012387 acttagccatgaaccaattccaaactaagagtttcactctatccaccacgggctcctcacagagagcaccaccagagaa 23012465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 45068156 - 45068239
Alignment:
Q  23 aggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgc 106  Q
    |||||||  ||||| ||||||||| |||||||||||| |||||||||||  |||||||||| |||  ||||||| | |||||||    
T  45068156 aggaactgccagggcacttagccaggaaccacttccaagctaagagtttagctctatccactacaggctcctcatgaagagtgc 45068239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 50655108 - 50655154
Alignment:
Q  25 gaactagcagggtacttagccatgaaccacttccaggctaagagttt 71  Q
    |||||||||||  ||||||||| |||||||||||| |||||||||||    
T  50655108 gaactagcaggacacttagccaggaaccacttccaagctaagagttt 50655154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 4866838 - 4866794
Alignment:
Q  27 actagcagggtacttagccatgaaccacttccaggctaagagttt 71  Q
    ||||||| || ||||||||| |||||||||||| |||||||||||    
T  4866838 actagcaaggcacttagccaggaaccacttccaagctaagagttt 4866794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 21926687 - 21926589
Alignment:
Q  17 aagaacaggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccagagaa 116  Q
    ||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||    
T  21926687 aagaacatgaactagcagggcacttagcca-gaaccacttccaggctaagagtttcactctatccaccacagactcctcacagggagtgccaccagagaa 21926589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 25410598 - 25410668
Alignment:
Q  17 aagaacaggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccaca 87  Q
    |||| |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| ||||    
T  25410598 aagagcaggaactagcaaggtacttagccaggaaccacttccaagctaagagtttcactctatccatcaca 25410668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 51871271 - 51871187
Alignment:
Q  18 agaacaggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggaga 102  Q
    ||||||||||||||||||| |||||| || |||||||||||| ||||||||||| | ||||||||||||   |||||||||||||    
T  51871271 agaacaggaactagcagggcacttagtcaggaaccacttccaagctaagagtttaattctatccaccactggctcctcacggaga 51871187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 44503980 - 44504079
Alignment:
Q  17 aagaacaggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccagagaa 116  Q
    |||| ||||||||| || |  |||||| ||||||||||||||| |||||||| |||||| |||||||||||  ||||||||| |||| ||||||||||||    
T  44503980 aagagcaggaactaccacgacacttagtcatgaaccacttccaagctaagagcttcactttatccaccacaggctcctcacgaagagcgccaccagagaa 44504079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 52372739 - 52372659
Alignment:
Q  17 aagaacaggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcac 97  Q
    |||| ||||||||||||||| || |||||| |||||||||| | |||||||||||| |||||||||||||| || ||||||    
T  52372739 aagagcaggaactagcagggcacctagccaggaaccacttctaagctaagagtttcgctctatccaccacagacccctcac 52372659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 13297658 - 13297595
Alignment:
Q  22 caggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccacca 85  Q
    ||||||||||||||  |||||||||||||||| || || |||||||||||||||||||||||||    
T  13297658 caggaactagcaggacacttagccatgaaccaatttcaagctaagagtttcactctatccacca 13297595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 9644432 - 9644339
Alignment:
Q  25 gaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccagagaaga 118  Q
    ||||||| |||  ||||||| | ||||||||||||  | ||||||||| |||||||||||| |  |||||||||||||| ||||||||||||||    
T  9644432 gaactagtaggacacttagctaggaaccacttccaacccaagagtttcgctctatccaccataggctcctcacggagagagccaccagagaaga 9644339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 40799712 - 40799625
Alignment:
Q  25 gaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccag 112  Q
    |||||||||  | ||||||| | |||| |||| || || ||||||||||||||||||||||||  |||||||||||||| | ||||||    
T  40799712 gaactagcaatgcacttagctaggaacaactttcaagccaagagtttcactctatccaccacaggctcctcacggagagcgtcaccag 40799625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 15274415 - 15274347
Alignment:
Q  18 agaacaggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccac 86  Q
    |||||| |||||||||||  ||||||| | ||| ||||| || ||||| ||||||||||| ||||||||    
T  15274415 agaacatgaactagcaggacacttagctaggaatcacttacaagctaaaagtttcactctgtccaccac 15274347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 34213209 - 34213118
Alignment:
Q  25 gaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccagagaa 116  Q
    ||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| |||   ||||||||||||| ||||||||||||    
T  34213209 gaactagcatggcacttagccatgaaccacttccaagctaagagtttcactctatccacaacaggttcctcacggagagcgccaccagagaa 34213118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 26982061 - 26982155
Alignment:
Q  22 caggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccagagaa 116  Q
    |||||||| |||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||||  ||||||||| || ||||||||||||||    
T  26982061 caggaacttgcagggcacttagccaagaaccacttccaagctaagagttttactctatccaccacaggctcctcacgaagggtgccaccagagaa 26982155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 2833336 - 2833394
Alignment:
Q  28 ctagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccac 86  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||    
T  2833336 ctagcagggcacttagccatgaaccacttccaagctaagagtttcactctatctaccac 2833394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 1045398 - 1045466
Alignment:
Q  18 agaacaggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccac 86  Q
    |||||| |||||||||||| ||||||||| |||||||||||| ||| ||||||| || |||||||||||    
T  1045398 agaacaagaactagcagggcacttagccaggaaccacttccaagctgagagtttaaccctatccaccac 1045466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 4778096 - 4778017
Alignment:
Q  22 caggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggag 101  Q
    |||| |||||||||| || |||||  ||||||||||||  |||||||||| |||||||||||||||  ||||||| ||||    
T  4778096 cagggactagcagggcacctagcctggaaccacttccaaactaagagtttaactctatccaccacaggctcctcatggag 4778017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 1762039 - 1762080
Alignment:
Q  39 cttagccatgaaccacttccaggctaagagtttcactctatc 80  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  1762039 cttagccatgaaccacttccaagctaagagtttcgctctatc 1762080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 41640888 - 41640824
Alignment:
Q  22 caggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccac 86  Q
    ||||||||||||||| ||||||||   ||||||||||| | ||||||||| ||||| ||||||||    
T  41640888 caggaactagcagggcacttagcccgaaaccacttccaagttaagagtttaactctgtccaccac 41640824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 10994500 - 10994432
Alignment:
Q  18 agaacaggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccac 86  Q
    ||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  10994500 agaacgggaactagcagggcacttagccaggaaccacttccaagctaagagtttaactctatccaccac 10994432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 29682769 - 29682701
Alignment:
Q  18 agaacaggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccac 86  Q
    |||||||| | ||||||||| |||||||  |||||||||| | ||||||||||| ||||||||||||||    
T  29682769 agaacagggattagcagggtgcttagcctggaaccacttctaagctaagagtttaactctatccaccac 29682701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 41074597 - 41074683
Alignment:
Q  27 actagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccaga 113  Q
    |||||||||| ||||||||| ||||||||| || |||||||||||| || | |||||||||   ||||||| ||||  |||||||||    
T  41074597 actagcagggcacttagccaggaaccactttcaagctaagagtttcgctttgtccaccacagtttcctcacagagaacgccaccaga 41074683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 43411578 - 43411515
Alignment:
Q  22 caggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccacca 85  Q
    ||||| ||||||||  ||||||||| ||| ||||| || |||||||||||| ||||||||||||    
T  43411578 caggagctagcaggacacttagccaggaaacactttcaagctaagagtttcgctctatccacca 43411515  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 23176958 - 23177026
Alignment:
Q  48 gaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccagagaa 116  Q
    ||||| |||||| ||||||||||||||||||| |||||||  |||||||||||||||||||| ||||||    
T  23176958 gaaccgcttccaagctaagagtttcactctatacaccacaggctcctcacggagagtgccactagagaa 23177026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 46028474 - 46028545
Alignment:
Q  26 aactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcac 97  Q
    ||||||||||  ||||||||| |||||||||||| |||||||||||| |||||||||||||| || ||||||    
T  46028474 aactagcaggacacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcac 46028545  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 26557857 - 26557933
Alignment:
Q  25 gaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggag 101  Q
    |||||||||||| ||||||||| || ||||| ||| ||||| ||||| ||||| |||||||||  ||||||||||||    
T  26557857 gaactagcagggcacttagccaggagccactaccaagctaaaagtttaactctgtccaccacaggctcctcacggag 26557933  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 33888677 - 33888605
Alignment:
Q  25 gaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcac 97  Q
    |||||||||||| ||||||||   |||||||||||  ||||||||| |||||||||||||||  |||||||||    
T  33888677 gaactagcagggcacttagcccgaaaccacttccaatctaagagttccactctatccaccactgactcctcac 33888605  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 12258423 - 12258360
Alignment:
Q  38 acttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggag 101  Q
    ||||||||| ||||||||| || ||||||||||| ||||||||||||| |   |||||||||||    
T  12258423 acttagccaggaaccactttcaagctaagagtttaactctatccaccataagttcctcacggag 12258360  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 40188220 - 40188282
Alignment:
Q  25 gaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccaca 87  Q
    |||||||||||| |||||| || |||||||||||| |||| ||||||  || |||||||||||    
T  40188220 gaactagcagggcacttaggcaagaaccacttccaagctatgagttttgctttatccaccaca 40188282  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 41650589 - 41650521
Alignment:
Q  22 caggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatac 90  Q
    ||||| ||||||| | ||||||||| |||||||||||| |||||||||||| |||||||||||||||||    
T  41650589 caggagctagcagagcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacatac 41650521  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 27639482 - 27639544
Alignment:
Q  25 gaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccaca 87  Q
    |||||||||||  | |||||||||||||||||||| ||||||| |||  ||||||||||||||    
T  27639482 gaactagcaggacatttagccatgaaccacttccaagctaagaattttgctctatccaccaca 27639544  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 3465354 - 3465424
Alignment:
Q  43 gccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccaga 113  Q
    |||| ||| |||||||| |||||||||||| |||||||||||| | ||||||| || |  |||||||||||    
T  3465354 gccaagaaacacttccaagctaagagtttcgctctatccaccaaagactcctctcgaaaggtgccaccaga 3465424  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 42032797 - 42032732
Alignment:
Q  22 caggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccaca 87  Q
    |||||| |||||||| ||||||||| |||||||||||| |||||||||||| |||||| |||||||    
T  42032797 caggaagtagcagggcacttagccaggaaccacttccaagctaagagtttcgctctattcaccaca 42032732  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 41927068 - 41926993
Alignment:
Q  38 acttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccaga 113  Q
    ||||||||| |||||||||||| |||||||| ||| ||||||||||||||  |||||| || ||||  ||||||||    
T  41927068 acttagccaggaaccacttccaagctaagagattcgctctatccaccacaggctcctctcgaagagcaccaccaga 41926993  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 42241259 - 42241350
Alignment:
Q  22 caggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccaga 113  Q
    |||||||||| || |  ||| |||| |||||||||||| |||||||||||| || ||||||||| |  |||||||||||| | |||||||||    
T  42241259 caggaactagtagagcgcttcgccaggaaccacttccaagctaagagtttcgctttatccaccaaaggctcctcacggagggcgccaccaga 42241350  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 2074829 - 2074923
Alignment:
Q  18 agaacaggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccag 112  Q
    ||||||||||||||||||| ||||||||  |||| ||||| |  |||||||||| ||| ||||||||||   |||||| |||||| | |||||||    
T  2074829 agaacaggaactagcagggcacttagcctggaacaacttcaaaactaagagtttaactatatccaccactggctcctctcggagaataccaccag 2074923  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 24604897 - 24604811
Alignment:
Q  26 aactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccag 112  Q
    ||||||||||  ||||||||| ||||||||| ||  ||||||||||| |||||||||||||   |||||| ||||| || |||||||    
T  24604897 aactagcaggccacttagccaagaaccactttcaatctaagagtttcgctctatccaccaccagctcctctcggagggtaccaccag 24604811  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 7656857 - 7656910
Alignment:
Q  48 gaaccacttccaggctaagagtttcactctatccaccacatactcctcacggag 101  Q
    ||||||||||||   |||||||||||||||||||||||||  ||||||||||||    
T  7656857 gaaccacttccaaattaagagtttcactctatccaccacaggctcctcacggag 7656910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 34152066 - 34152126
Alignment:
Q  39 cttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacgg 99  Q
    |||||||| |||||||||||| |||||||||||  |||||||||| |||  ||||||||||    
T  34152066 cttagccaggaaccacttccaagctaagagtttagctctatccacaacaggctcctcacgg 34152126  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 36650460 - 36650524
Alignment:
Q  22 caggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccac 86  Q
    |||||||||||| |  ||||||||  |||||||| ||| ||||||||||| ||||| ||||||||    
T  36650460 caggaactagcaagacacttagcccggaaccactcccaagctaagagtttaactctgtccaccac 36650524  T

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Target: scaffold0042 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 83251 - 83311
Alignment:
Q  25 gaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccacca 85  Q
    |||||||||||  |||| | ||||||||||||||| ||||||||||| ||| |||||||||    
T  83251 gaactagcaggacacttcggcatgaaccacttccaagctaagagtttgactttatccacca 83311  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 9755691 - 9755759
Alignment:
Q  18 agaacaggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccac 86  Q
    |||||| |||||||||||| ||||||||   |||||||||||  |||||||||||||| | ||||||||    
T  9755691 agaacatgaactagcagggcacttagcccgaaaccacttccaaactaagagtttcactttgtccaccac 9755759  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 52055 - 51962
Alignment:
Q  25 gaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacatactcctcacggagagtgccaccagagaaga 118  Q
    ||||||||| |  ||||||||| |||||||||||| |||||||||||  ||| |||||||| |  |||||| | ||| | ||||||||| ||||    
T  52055 gaactagcaagacacttagccaggaaccacttccaagctaagagtttagctcgatccaccataggctcctctctgagggagccaccagaaaaga 51962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 18456 - 18522
Alignment:
Q  22 caggaactagcagggtacttagccatgaaccacttccaggctaagagtttcactctatccaccacat 88  Q
    ||||||||||||||| ||||||||  ||| ||||| ||  ||| ||||||| |||||||||||||||    
T  18456 caggaactagcagggcacttagcccagaatcactttcaaactatgagtttcgctctatccaccacat 18522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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