View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_31 (Length: 353)
Name: NF12929_low_31
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 6232761 - 6232433
Alignment:
| Q |
19 |
atatgggctcttggttgcgccgtcgtggagatgattaccggagaacccgc---atggaatgagtcagatatgttaatgttgacgattcgaattggggttg |
115 |
Q |
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| T |
6232761 |
atatgggctcttggttgcgccgtcgtggagatgattaccggagaacccgccgcatggaatgaatcagatatgttgatgttgacgattcgaattggtgttg |
6232662 |
T |
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| Q |
116 |
gagaagaattgccaaagattccagacgaattatcacaagaaggaaaagattttctagaaaagtgtttcattaaggatcctttgagaagatggacagcaga |
215 |
Q |
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| T |
6232661 |
gagaagaattgccaaaaattccagaggaattatcacaagaaggaaaagattttttagaaaagtgtttcattaaggatcctttgagaagatggacagcaga |
6232562 |
T |
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| Q |
216 |
tatgctcttcaaacatccgtttatctccgatgttgaaactgtttcagttgtaaatgagttagttgatgagttgccattgtcttcaccttctccaaaaact |
315 |
Q |
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| T |
6232561 |
tatgctcttcaaacatccgtttatctccgatgttgaaactgtttcagttgtaaatgagttagttgatgagttgccattgtcttcaccttctccaaaaact |
6232462 |
T |
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| Q |
316 |
tacttcaatatgctcattgtgtttcttct |
344 |
Q |
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| T |
6232461 |
tacttcaatatgctcattgtgtttcttct |
6232433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 296
Target Start/End: Complemental strand, 6221863 - 6221699
Alignment:
| Q |
132 |
gattccagacgaattatcacaagaaggaaaagattttctagaaaagtgtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacat |
231 |
Q |
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||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||||| | ||||||||| ||||| ||||| || |||||| |
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| T |
6221863 |
gattccagatgaattatcacaagtcggaaaagattttctcgaaaagtgtttcatcaaggatccttcaaaaagatggacggcagagatgcttttgaaacat |
6221764 |
T |
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| Q |
232 |
ccgtttatctccgatgttgaaactgtttcagttgtaaatgagttagttgatgagttgccattgtc |
296 |
Q |
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| T |
6221763 |
gagtttatctcaggtgatgaaactgtttcattggtgaaagagttgatcaatgagttgccattgtc |
6221699 |
T |
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