View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_33 (Length: 349)
Name: NF12929_low_33
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 44731091 - 44731397
Alignment:
| Q |
1 |
gataggattttgaaggaagatagaagttatatgttgggtatgattgataagattaaagcatctggatgtaatgtgttgttgactcaggaggagagtattt |
100 |
Q |
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| T |
44731091 |
gataggattttgaaggaagatagaagttatatgttgggtatgattgataagattaaagcatctggatgtaatgtgttgttgactcaggaggagagtattt |
44731190 |
T |
|
| Q |
101 |
tgagtgatgctgctactgatttgtctttgcattatcttgctaaaactaacattttggtgattaaggatgttgaatgcgatgagattaagattattaccaa |
200 |
Q |
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| T |
44731191 |
tgagtgatgctgctactgatttgtctttgcattatcttgctaaagctaacattttggtgattaaggatgttgaatgcaatgagattgagattattaccaa |
44731290 |
T |
|
| Q |
201 |
gacacttaattgtttgcctattggctaatattgagcatttttgtaaagagatgttgggttatgctgatcttgtggaggaggttgctcttggggatgatgg |
300 |
Q |
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| T |
44731291 |
gacacttaattgtttgcctattggctaatattgagcatttttgtaaagagaagttgggttatgctgatcttgtggaggaggttgctcttggggatgatgg |
44731390 |
T |
|
| Q |
301 |
gaagatt |
307 |
Q |
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| T |
44731391 |
gaagatt |
44731397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 50701637 - 50701928
Alignment:
| Q |
1 |
gataggattttgaaggaagatagaagttatatgttgggtatgattgataagattaaagcatctggatgtaatgtgttgttgactcaggaggagagtattt |
100 |
Q |
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|||||||||||||||||||| || |||||||| || || |||||| | ||||| || ||| | || |||||||||||||||| || | ||||||||| |
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| T |
50701637 |
gataggattttgaaggaagagaggagttatattttagggatgattaagaagatcaaggcaaccggttgtaatgtgttgttgattc---aaaagagtattt |
50701733 |
T |
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| Q |
101 |
tgagtgatgctgctactgatttgtctttgcattatcttgctaaaactaacattttggtgattaaggatgttgaatgcgatgagattaagattattaccaa |
200 |
Q |
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| T |
50701734 |
tgagagatgctgttactgatttgtctttgcattatcttgctaaagctaagattttagtgattaaagatgttgagcgtgacgagattgagttcattaccaa |
50701833 |
T |
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| Q |
201 |
gacacttaattgtttgcctattggctaatattgagcatttttgtaaagagatgttgggttatgctgatcttgtggaggaggttgctcttggggatg |
296 |
Q |
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||| |||||||||||||||||| ||||||||||| |||||| || |||| ||||||||||||||||||||| || ||| || |||||||||||| |
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| T |
50701834 |
gactcttaattgtttgcctatt-gctaatattgaacattttcgtgctgagaagttgggttatgctgatcttgtagaagagctttctcttggggatg |
50701928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 20826776 - 20826854
Alignment:
| Q |
92 |
agagtattttgagtgatgctgctactgatttgtctttgcattatcttgctaaaactaacattttggtgattaaggatgt |
170 |
Q |
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||||||||||||| |||| || | |||||||||||||||||||||||| |||| |||| ||||||||||||| ||||| |
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| T |
20826776 |
agagtattttgagagatgttgttgctgatttgtctttgcattatcttgttaaagctaagtttttggtgattaaagatgt |
20826854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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