View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_36 (Length: 327)
Name: NF12929_low_36
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 49335932 - 49336243
Alignment:
| Q |
1 |
agggtcaatttgttgaagctgtttctctctatgttcaaatgaggaggattgggttgtgtccaagttcacatgctgtatcctctattctcaagtcatgtgc |
100 |
Q |
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| T |
49335932 |
agggtcaatttgttgaagctgtttctctctatgttcaaatgaggaggattgggttgtgtccaagttcacatgctgtatcctctattctcaagtcatgtgc |
49336031 |
T |
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| Q |
101 |
tcgggttgaggatgatttgtgtggtttattgattcatgggcatgttcataaatttggatttgatgcttgtgtttatgtacaaacggcgctgcttgatttg |
200 |
Q |
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| T |
49336032 |
tcgggttgaggatgatttgtgtggtttattgattcatgggcatgttcataaatttggatttgatgcttgtgtttatgtacaaacggcgctgcttgatttg |
49336131 |
T |
|
| Q |
201 |
tactgtaaaattggcgatgtggtgactgcacgtaaggtgtttgatgaaatgcctgacaaaaatgttgtttcttggaattctctgttaagtgggtatataa |
300 |
Q |
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| T |
49336132 |
tactgtaaaattggtgatgtggtgactgcacgtaaggtgtttgatgaaatgcctgacaaaaatgttgtttcttggaattctctgttaagtgggtatataa |
49336231 |
T |
|
| Q |
301 |
aaggtggtaact |
312 |
Q |
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|||||||||||| |
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| T |
49336232 |
aaggtggtaact |
49336243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 1481686 - 1481728
Alignment:
| Q |
226 |
ctgcacgtaaggtgtttgatgaaatgcctgacaaaaatgttgt |
268 |
Q |
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| T |
1481686 |
ctgcacgtaaggtgttcgatgaaatgcctgacagaaatgttgt |
1481728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 24700920 - 24700869
Alignment:
| Q |
226 |
ctgcacgtaaggtgtttgatgaaatgcctgacaaaaatgttgtttcttggaa |
277 |
Q |
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| T |
24700920 |
ctgcacggaaggtgtttgatgaaatgccggaaagaagtgttgtttcttggaa |
24700869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 42761157 - 42761202
Alignment:
| Q |
231 |
cgtaaggtgtttgatgaaatgcctgacaaaaatgttgtttcttgga |
276 |
Q |
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| T |
42761157 |
cgtaaggtgtttgatgaattgtctgacagaaatgtggtttcttgga |
42761202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 45164786 - 45164834
Alignment:
| Q |
238 |
tgtttgatgaaatgcctgacaaaaatgttgtttcttggaattctctgtt |
286 |
Q |
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|||||||| ||||||||| ||| |||||||||||||||||||| |||| |
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| T |
45164786 |
tgtttgatttaatgcctgagaaagatgttgtttcttggaattctttgtt |
45164834 |
T |
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