View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_43 (Length: 292)
Name: NF12929_low_43
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_43 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 5380472 - 5380671
Alignment:
| Q |
9 |
acagatagtgctaccagtgttctatgatgttgatccctccgaggtacgtcaccaaactggtgagtttggacaagcgtttgagagtctcttgagcaaactt |
108 |
Q |
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| T |
5380472 |
acagatagtgctaccggtgttctatgatgttgatcccttggaggtacgtcaccaaactggtgagtttggacaagcttttgaaagtctcttgagcaaactt |
5380571 |
T |
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| Q |
109 |
tcgaagaagaagaagaaagataagtcgccgaaatggagagaggctcttcgtggtgctgctgcctttgctggctttgtagttataaactccaggtaatttt |
208 |
Q |
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| T |
5380572 |
tc---gaagaagaagaaagataagacgctgaaatggagagaggctcttcatggggctgctgcctttgctggatttgtagttctaaactccaggtaatttt |
5380668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 5174250 - 5174359
Alignment:
| Q |
10 |
cagatagtgctaccagtgttctatgatgttgatccctccgaggtacgtcaccaaactggtgagtttggacaagcgtttgagagtctcttgagcaaacttt |
109 |
Q |
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| T |
5174250 |
cagatagtgttgccggtgttctatgatgttgatccttcggatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaattt |
5174349 |
T |
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| Q |
110 |
cgaagaagaa |
119 |
Q |
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| T |
5174350 |
caaagaagaa |
5174359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 5275996 - 5276105
Alignment:
| Q |
10 |
cagatagtgctaccagtgttctatgatgttgatccctccgaggtacgtcaccaaactggtgagtttggacaagcgtttgagagtctcttgagcaaacttt |
109 |
Q |
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| T |
5275996 |
cagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaattt |
5276095 |
T |
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| Q |
110 |
cgaagaagaa |
119 |
Q |
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| T |
5276096 |
caaagaagaa |
5276105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 5692920 - 5692812
Alignment:
| Q |
10 |
cagatagtgctaccagtgttctatgatgttgatccctccgaggtacgtcaccaaactggtgagtttggacaagcgtttgagagtctcttgagcaaacttt |
109 |
Q |
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| T |
5692920 |
cagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaattt |
5692821 |
T |
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| Q |
110 |
cgaagaaga |
118 |
Q |
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| T |
5692820 |
caaagaaga |
5692812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 5107771 - 5107709
Alignment:
| Q |
16 |
gtgctaccagtgttctatgatgttgatccctccgaggtacgtcaccaaactggtgagtttgga |
78 |
Q |
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| T |
5107771 |
gtgcttccggtgttctatgatgttgatccctcagaagtacgtcatcaaactggtgagtttgga |
5107709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 5429837 - 5429905
Alignment:
| Q |
138 |
gaaatggagagaggctcttcgtggtgctgctgcctttgctggctttgtagttataaactccaggtaatt |
206 |
Q |
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| T |
5429837 |
gaaatggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggtaatt |
5429905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 11821 - 11720
Alignment:
| Q |
124 |
aaagataagtcgccgaaatggagagaggctcttcgtggtgctgctgcctttgctggctttgtagttataaactccaggtaattttcaaatgttaagtgat |
223 |
Q |
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| T |
11821 |
aaagataagtcgccgaaatggagagaggctcttcgtggtgctactg---------gctttgtagttctaaactccaggtaattttcaaatgttaagtgat |
11731 |
T |
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| Q |
224 |
gacatcaaaat |
234 |
Q |
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| T |
11730 |
gacatgaaaat |
11720 |
T |
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