View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_46 (Length: 258)
Name: NF12929_low_46
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_46 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 33561649 - 33561884
Alignment:
| Q |
1 |
cataaaagggtgtgtaaaattcaccattgttttacaagtggaagatataaagcctagattgcagtgaaaaaggattttagagaaaatgctatctagtttt |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33561649 |
cataaaagggtgtgtaaaattcgccattgttttacaagtggaagatataaagcctagattgcagtgaaaaaggattttagagaaaatgctatctagtttt |
33561748 |
T |
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| Q |
101 |
gtataacatggcagattggtcatataaaattgtcccatgaagagcttgtttagcaacgaccagcatccagcattagagcttgttccatgactttccctag |
200 |
Q |
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| T |
33561749 |
gtataacatggcagattggtcatataaaattgtcccatgaagagcttgtttagcaacgaccagcatccagcattagagcttgttccatgactttccctag |
33561848 |
T |
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| Q |
201 |
attatctgtaaaactcaacaccagcatccaagatct |
236 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
33561849 |
attatctgtaaaactcaacaccagcatccaacatct |
33561884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 33561579 - 33561648
Alignment:
| Q |
1 |
cataaaagggtgtgtaaaattcaccattgttttacaagtggaagatataaagcctagattgcagtgaaaa |
70 |
Q |
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| T |
33561579 |
cataaaagggtgtgtaaaattcgccattgttttacaagtggaagatataaagcctagattgcagtgaaaa |
33561648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33561510 - 33561572
Alignment:
| Q |
1 |
cataaaagggtgtgtaaaattcaccattgttttacaagtggaagatataaagcctagattgca |
63 |
Q |
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|||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
33561510 |
catagaagggtgtgtaaaatttgccattgtttaacaagtggaagatataaagcctagattgca |
33561572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 258
Target Start/End: Original strand, 33561892 - 33561922
Alignment:
| Q |
228 |
ccaagatctagttcattccaatatttagtat |
258 |
Q |
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| T |
33561892 |
ccaagatctagttcattccaatatttagtat |
33561922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 39162643 - 39162900
Alignment:
| Q |
1 |
cataaaagggtgtgtaaaattcaccattgttttacaagtggaagatataaagcctagattgcagtgaaaaaggattttagagaaaatgctatctagtttt |
100 |
Q |
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|||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39162643 |
cataaaagggtgtgaaaaatttgtcattgttttacaagtggatgatataaagcctagattgcagtgaaaaaggattttagagaaaatgctatctagtttt |
39162742 |
T |
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| Q |
101 |
gtataacatggcagattggtcatataaaattgtcccatgaagagcttgtttagcaacgaccagcatccagcattagagcttgttccatgactttccctag |
200 |
Q |
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||||||||||||||||||||||||||| ||| || |||||||||||||||| |||||||| ||||||| | | |||||||||||||||||||||||||| |
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| T |
39162743 |
gtataacatggcagattggtcatataatattttctgatgaagagcttgtttatcaacgaccggcatccaacttcagagcttgttccatgactttccctag |
39162842 |
T |
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| Q |
201 |
attatctgtaaaactcaacaccagcatccaagatctagttcattccaatatttagtat |
258 |
Q |
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| T |
39162843 |
attatctgtaacactcagcaccaacattcaacatctagttcattccaatatttagtat |
39162900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 39206551 - 39206294
Alignment:
| Q |
1 |
cataaaagggtgtgtaaaattcaccattgttttacaagtggaagatataaagcctagattgcagtgaaaaaggattttagagaaaatgctatctagtttt |
100 |
Q |
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|||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39206551 |
cataaaagggtgtgaaaaatttgtcattgttttacaagtggatgatataaagcctagattgcagtgaaaaaggattttagagaaaatgctatctagtttt |
39206452 |
T |
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| Q |
101 |
gtataacatggcagattggtcatataaaattgtcccatgaagagcttgtttagcaacgaccagcatccagcattagagcttgttccatgactttccctag |
200 |
Q |
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||||||||||||||||||||||||||| ||| || |||||||||||||||| |||||||| ||||||| | | |||||||||||||||||||||||||| |
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| T |
39206451 |
gtataacatggcagattggtcatataatattttctgatgaagagcttgtttatcaacgaccggcatccaacttcagagcttgttccatgactttccctag |
39206352 |
T |
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| Q |
201 |
attatctgtaaaactcaacaccagcatccaagatctagttcattccaatatttagtat |
258 |
Q |
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| T |
39206351 |
attatctgtaacactcagcaccaacattcaacatctagttcattccaatatttagtat |
39206294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 157
Target Start/End: Complemental strand, 39197353 - 39197223
Alignment:
| Q |
27 |
ttgttttacaagtggaagatataaagcctagattgcagtgaaaaaggattttagagaaaatgctatctagttttgtataacatggcagattggtcatata |
126 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||| |||||||||||| | |
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| T |
39197353 |
ttgttttacaagtggaaaatataaagcctagattgcagtgaaacaagattttagataaaatgctatatagttttgtataacatggaagattggtcataga |
39197254 |
T |
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| Q |
127 |
aaattgtcccatgaagagcttgtttagcaac |
157 |
Q |
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|||| |||| ||||||||||||||||||||| |
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| T |
39197253 |
aaatggtccaatgaagagcttgtttagcaac |
39197223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 39388356 - 39388229
Alignment:
| Q |
33 |
tacaagtggaagatataaagcctaga----ttgcagtgaaaaaggattttagagaaaatgctatctagttttgtataacatggcagattggtcatataaa |
128 |
Q |
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||||||||||||| |||||||||||| ||||| ||||| | |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
39388356 |
tacaagtggaagaaataaagcctagaatgattgcaatgaaagaagattttagagaaaatgttacgtagttttgtataacatggcagattggtcatataaa |
39388257 |
T |
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| Q |
129 |
attgtcccatgaagagcttgtttagcaa |
156 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
39388256 |
attgtccaatgaagagcttgtttagcaa |
39388229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 39388154 - 39388110
Alignment:
| Q |
186 |
catgactttccctagattatctgtaaaactcaacaccagcatcca |
230 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
39388154 |
catgactttctctagattatctgtaacgttcaacaccagcatcca |
39388110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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