View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12929_low_49 (Length: 250)

Name: NF12929_low_49
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12929_low_49
NF12929_low_49
[»] chr8 (5 HSPs)
chr8 (1-235)||(3763165-3763399)
chr8 (1-235)||(5515021-5515244)
chr8 (135-235)||(39580354-39580454)
chr8 (121-235)||(15050328-15050440)
chr8 (122-235)||(10181804-10181917)
[»] chr2 (6 HSPs)
chr2 (1-235)||(9910317-9910551)
chr2 (83-235)||(6186542-6186694)
chr2 (83-235)||(14951108-14951260)
chr2 (75-235)||(38531622-38531781)
chr2 (121-235)||(27888516-27888630)
chr2 (121-235)||(1533042-1533156)
[»] chr3 (4 HSPs)
chr3 (1-235)||(31698937-31699171)
chr3 (121-235)||(46743175-46743289)
chr3 (155-235)||(52984633-52984712)
chr3 (188-235)||(52991655-52991702)
[»] chr5 (9 HSPs)
chr5 (1-235)||(40600069-40600292)
chr5 (1-235)||(42268990-42269213)
chr5 (83-229)||(12155986-12156132)
chr5 (122-235)||(26331367-26331480)
chr5 (121-230)||(26331707-26331816)
chr5 (134-229)||(24867389-24867484)
chr5 (82-184)||(11470623-11470725)
chr5 (85-150)||(42221195-42221260)
chr5 (74-150)||(34574450-34574526)
[»] chr1 (9 HSPs)
chr1 (1-235)||(2077606-2077830)
chr1 (83-231)||(10494542-10494690)
chr1 (83-229)||(14351462-14351608)
chr1 (75-232)||(11814351-11814510)
chr1 (123-236)||(29099278-29099391)
chr1 (121-235)||(27787029-27787143)
chr1 (1-42)||(11814604-11814645)
chr1 (121-206)||(26842258-26842343)
chr1 (121-218)||(25537469-25537564)
[»] chr7 (7 HSPs)
chr7 (1-232)||(43047877-43048097)
chr7 (75-235)||(24717747-24717907)
chr7 (121-235)||(32978960-32979074)
chr7 (122-229)||(21590826-21590933)
chr7 (80-194)||(26711907-26712022)
chr7 (1-39)||(32979120-32979158)
chr7 (10-74)||(24717897-24717961)
[»] scaffold0974 (1 HSPs)
scaffold0974 (1-235)||(2592-2815)
[»] chr6 (5 HSPs)
chr6 (75-235)||(10772595-10772754)
chr6 (75-235)||(30845123-30845283)
chr6 (83-235)||(24350458-24350610)
chr6 (83-235)||(24842888-24843039)
chr6 (141-229)||(10670327-10670415)
[»] chr4 (5 HSPs)
chr4 (84-229)||(52635391-52635535)
chr4 (121-229)||(45872871-45872979)
chr4 (179-235)||(55728390-55728446)
chr4 (197-235)||(12130358-12130396)
chr4 (74-150)||(55728451-55728526)
[»] scaffold0083 (1 HSPs)
scaffold0083 (160-235)||(2886-2963)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 3763165 - 3763399
Alignment:
Q  1 tttcttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagaga 100  Q
    |||||||||||||||||||||||||  |||||||||||||||  ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  3763165 tttcttctatgagtttgttgttaatgaagttttcaaatacttacgtggtgagtttacctgtgcttaactgcgctttaactatgctcaactgcagaagaga 3763264  T
Q  101 aacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggt 200  Q
    |  ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||    
T  3763265 agaaaagtgcagttatacaggtttttggtaggattgatgattattttggatgagttttgcaatggtttggcacaagacttgtttctgctattgctcaggt 3763364  T
Q  201 gtttagactttgatttttggagatgactttttggt 235  Q
    ||||| |||||||||||||||||||||||||||||    
T  3763365 gtttaaactttgatttttggagatgactttttggt 3763399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 5515244 - 5515021
Alignment:
Q  1 tttcttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagaga 100  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||||||| ||||| ||||||||||||||||           |||||||||||||||    
T  5515244 tttcttctatgagtttgttgttaattgggttttcaaatacttaggtggtgattttacttgtgcttaactgcgct-----------caactgcagaagaga 5515156  T
Q  101 aacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggt 200  Q
    | |||||||||||||  |  ||||||||||||||||||| ||||||||||||  ||||||||| ||||| |||||||||||||| | ||||||||||||     
T  5515155 agcaaagtgcggttacccgggtttttggtaggattgatggttattttggatggattttgcaacagtttggcacaagacttgtttctactattgctcaggc 5515056  T
Q  201 gtttagactttgatttttggagatgactttttggt 235  Q
     |||||| |||| ||||||||||||||||||||||    
T  5515055 atttagaatttggtttttggagatgactttttggt 5515021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 39580354 - 39580454
Alignment:
Q  135 tgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttgg 234  Q
    ||||| |||||||||||   |||| |||||||||||||||||| |||||||||||||||  |||  |||||||||||| |||||||||||||||| ||||    
T  39580354 tgatggttattttggatagatttttcaacggtttgacacaagatttgtttatgctattgtgcagacgtttagactttggtttttggagatgacttcttgg 39580453  T
Q  235 t 235  Q
    |    
T  39580454 t 39580454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 15050328 - 15050440
Alignment:
Q  121 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 220  Q
    |||||||||||| |||||| |||||  |||   ||||| ||||||| |||||||||| |||||| |||||||||  ||| ||||||||||||||||||      
T  15050328 gtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgcgtaggcgtttagactttgattttttt 15050425  T
Q  221 agatgactttttggt 235  Q
    |||||| || |||||    
T  15050426 agatgatttcttggt 15050440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 10181917 - 10181804
Alignment:
Q  122 tttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgga 221  Q
    ||||||||||| ||||||  |||||||||   |||||  ||||||||| |||| || |||||||||||||| | |||  |||| | |||| |||||||||    
T  10181917 tttttggtaggtttgatggctattttggagaggttttttaacggtttggcacatgatttgtttatgctatttcccagtcgtttggtctttaatttttgga 10181818  T
Q  222 gatgactttttggt 235  Q
    |||||||| |||||    
T  10181817 gatgacttcttggt 10181804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 9910551 - 9910317
Alignment:
Q  1 tttcttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagaga 100  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||||||| ||||| |||||| |||||||||||||||  ||||||||||||||||||    
T  9910551 tttcttctatgagtttgttgttaatggggttttcaaatacttaggtggtgattttacatgtgctgaactgcgctttaacttcgctcaactgcagaagaga 9910452  T
Q  101 aacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggt 200  Q
    |||||||| |||||| ||  ||||||||||||||||||  ||||||| |||| |||||||||||||||| |||||||||||||| ||||||||||||||     
T  9910451 aacaaagtacggttacacgagtttttggtaggattgatagttatttttgatgggttttgcaacggtttgtcacaagacttgtttctgctattgctcaggc 9910352  T
Q  201 gtttagactttgatttttggagatgactttttggt 235  Q
    |||||||||||| ||||||||||||||||||||||    
T  9910351 gtttagactttggtttttggagatgactttttggt 9910317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 6186542 - 6186694
Alignment:
Q  83 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 182  Q
    |||||||||||||||||||  |||||||| ||| ||  |||||||||| | ||||| ||||||||| | | |||||||||||||||||||||||| ||||    
T  6186542 gctcaactgcagaagagaagtaaagtgcgattacacgagtttttggtaagtttgataattattttgaaggggttttgcaacggtttgacacaagatttgt 6186641  T
Q  183 ttatgctattgctcaggtgtttagactttgatttttggagatgactttttggt 235  Q
    || ||||||||| | ||||||||||||||  |||||||||||||||| |||||    
T  6186642 ttttgctattgcgcgggtgtttagactttagtttttggagatgacttcttggt 6186694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 14951108 - 14951260
Alignment:
Q  83 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 182  Q
    ||||||||||||||||||| ||| ||||| ||| ||  |||||||||||| |||||| |||||||||| | |||||||||||||||| ||||||| ||||    
T  14951108 gctcaactgcagaagagaagcaatgtgcgattacacgagtttttggtaggtttgatggttattttggaggggttttgcaacggtttggcacaagatttgt 14951207  T
Q  183 ttatgctattgctcaggtgtttagactttgatttttggagatgactttttggt 235  Q
    || ||||||||| | ||||||||||||||  | ||||||||||| || |||||    
T  14951208 ttctgctattgcgcgggtgtttagactttagtgtttggagatgatttcttggt 14951260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 235
Target Start/End: Original strand, 38531622 - 38531781
Alignment:
Q  75 ttaactgtgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacaca 174  Q
    |||||||||||||||||||||||| || ||| ||||||||| ||  |||||||||||| |||||| || ||||||| | |||||||||| ||||  ||||    
T  38531622 ttaactgtgctcaactgcagaagaaaagcaaggtgcggttacacgggtttttggtaggtttgatggttcttttggagg-gttttgcaacagtttagcaca 38531720  T
Q  175 agacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttggt 235  Q
    ||| |||||| ||||| | | ||||||||||||| ||| ||||||||||||||||||||||    
T  38531721 agatttgtttctgctactacgcaggtgtttagacgttggtttttggagatgactttttggt 38531781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 27888630 - 27888516
Alignment:
Q  121 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 220  Q
    |||||||||||| | |||| ||||||||||   |||||  || |||||||||||||| |||||| | ||||||| |||  |||||||||||| |||||||    
T  27888630 gtttttggtaggttcgatggttattttggagaggttttttaaaggtttgacacaagatttgtttctactattgcgcagacgtttagactttggtttttgg 27888531  T
Q  221 agatgactttttggt 235  Q
    ||||||||| |||||    
T  27888530 agatgacttcttggt 27888516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 1533156 - 1533042
Alignment:
Q  121 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 220  Q
    |||| ||||| | |||||| ||||||||||   |||||  || |||||| ||||||| |||||| ||||||||| ||   |||| ||||||| |||||||    
T  1533156 gtttatggtaagtttgatggttattttggagaggttttttaatggtttggcacaagatttgtttctgctattgcgcaaacgtttggactttggtttttgg 1533057  T
Q  221 agatgactttttggt 235  Q
    ||||||||| |||||    
T  1533056 agatgacttcttggt 1533042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 31699171 - 31698937
Alignment:
Q  1 tttcttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagaga 100  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  31699171 tttcttctatgagtttgttgttaatggggttttcaaatacttaggtggtgattttacctgtgcttaactacgctttaactgcgctcaactgcagaagaga 31699072  T
Q  101 aacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggt 200  Q
    | || |||||||||| ||  ||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |||     
T  31699071 agcagagtgcggttacacgggtttttggtaggattcatggttattttggatgggttttgcaacagtttgacacaagacttgtttatgttattgcttaggc 31698972  T
Q  201 gtttagactttgatttttggagatgactttttggt 235  Q
     ||||||||||| ||||||||||| ||||||||||    
T  31698971 atttagactttggtttttggagattactttttggt 31698937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 46743175 - 46743289
Alignment:
Q  121 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 220  Q
    |||||||||||| |||||| |||||||||||  |||||  || |||||| ||||||| |||||| ||||||||| | || |||| ||||||| ||||| |    
T  46743175 gtttttggtaggtttgatggttattttggataggttttttaatggtttggcacaagatttgtttctgctattgcgcgggcgtttggactttggtttttag 46743274  T
Q  221 agatgactttttggt 235  Q
    ||||||||| |||||    
T  46743275 agatgacttcttggt 46743289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 52984633 - 52984712
Alignment:
Q  155 ttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttggt 235  Q
    |||||||||| |||| ||||||| |||||| ||||||||| | ||||||||||||||  |||||| ||||||||| |||||    
T  52984633 ttttgcaacg-tttggcacaagatttgtttctgctattgcgcgggtgtttagactttagtttttgcagatgacttcttggt 52984712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 52991655 - 52991702
Alignment:
Q  188 ctattgctcaggtgtttagactttgatttttggagatgactttttggt 235  Q
    ||||||| | || ||||||||||||||||||||||||||||| |||||    
T  52991655 ctattgcgcgggcgtttagactttgatttttggagatgacttcttggt 52991702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 40600069 - 40600292
Alignment:
Q  1 tttcttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagaga 100  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||||||| |||||| |||||||||||||||           |||||||||||||||    
T  40600069 tttcttctatgagtttgttgttaatggggttttcaaatacttaggtggtgattttaccagtgcttaactgcgct-----------caactgcagaagaga 40600157  T
Q  101 aacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggt 200  Q
    | |||||||| |||||||  |||||||||||| |||||| |||||||||| | |||||||||||||||| |||||||||||||| |||||||||| |||     
T  40600158 agcaaagtgcagttatacgagtttttggtaggtttgatggttattttggacgggttttgcaacggtttggcacaagacttgtttttgctattgcttaggc 40600257  T
Q  201 gtttagactttgatttttggagatgactttttggt 235  Q
    ||| | |||||||||||||||||||||||||||||    
T  40600258 gttcatactttgatttttggagatgactttttggt 40600292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 42268990 - 42269213
Alignment:
Q  1 tttcttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagaga 100  Q
    ||||||||||||||||||||||||| | ||||||||||| || |||||||| ||||| ||||||||||| ||||           |||||||||||||||    
T  42268990 tttcttctatgagtttgttgttaattgggttttcaaataattaggtggtgattttacttgtgcttaactacgct-----------caactgcagaagaga 42269078  T
Q  101 aacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggt 200  Q
    | |||||||||||||  |  ||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||||||||| | ||||||||||||     
T  42269079 agcaaagtgcggttacccgagtttttggtaggattgatggttattttggatgggttttgcaacagtttggcacaagacttgtttctactattgctcaggc 42269178  T
Q  201 gtttagactttgatttttggagatgactttttggt 235  Q
    ||||||| |||| ||||||||||||||||||||||    
T  42269179 gtttagaatttggtttttggagatgactttttggt 42269213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 12156132 - 12155986
Alignment:
Q  83 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 182  Q
    |||||||||| |||||||| ||| ||||| |||  |  |||||||||||| |||||| |||||||||| | ||||||||| |||||||||||||| ||||    
T  12156132 gctcaactgctgaagagaagcaaggtgcgattacgcgagtttttggtaggtttgatggttattttggaggggttttgcaatggtttgacacaagatttgt 12156033  T
Q  183 ttatgctattgctcaggtgtttagactttgatttttggagatgactt 229  Q
    || ||||||||| | ||||||||||||||  ||||||||||||||||    
T  12156032 ttctgctattgcgcgggtgtttagactttagtttttggagatgactt 12155986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 235
Target Start/End: Original strand, 26331367 - 26331480
Alignment:
Q  122 tttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgga 221  Q
    ||||||||||| |||||||||||||| ||   ||||| ||||| |||   |||||| |||||||||||||||| |||  |||||||||||| ||||||||    
T  26331367 tttttggtaggtttgatgattattttagagatgtttttcaacgatttcgtacaagatttgtttatgctattgcacagacgtttagactttggtttttgga 26331466  T
Q  222 gatgactttttggt 235  Q
    |||||||| |||||    
T  26331467 gatgacttattggt 26331480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 26331707 - 26331816
Alignment:
Q  121 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 220  Q
    |||||||||||| |||||||||||||| ||   ||||| ||||| |||   |||||| |||||||||||||||| |||  |||||||||||| |||||||    
T  26331707 gtttttggtaggtttgatgattattttagagatgtttttcaacgatttcgtacaagatttgtttatgctattgcacagacgtttagactttggtttttgg 26331806  T
Q  221 agatgacttt 230  Q
    ||||||||||    
T  26331807 agatgacttt 26331816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 24867389 - 24867484
Alignment:
Q  134 ttgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactt 229  Q
    |||||| ||||||||||   | ||| |||||| ||| ||||||| |||||||||||||||| || | |||||||||||| ||||||||||||||||    
T  24867389 ttgatggttattttggagaggattttcaacggattggcacaagatttgtttatgctattgcgcatgcgtttagactttggtttttggagatgactt 24867484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 11470725 - 11470623
Alignment:
Q  82 tgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttg 181  Q
    ||||||| |||| ||||||||||| ||| ||||| ||  |||||||||||| |||||   ||||||| | | |||||||||||||||| ||||||| |||    
T  11470725 tgctcaaatgcaaaagagaaacaatgtgtggttacacgagtttttggtaggtttgatagctattttgaaggggttttgcaacggtttggcacaagatttg 11470626  T
Q  182 ttt 184  Q
    |||    
T  11470625 ttt 11470623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 42221260 - 42221195
Alignment:
Q  85 tcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttgga 150  Q
    ||||||||||| ||||| ||| ||||||||  ||| |||||||||||| |||||  ||||||||||    
T  42221260 tcaactgcagatgagaagcaaggtgcggttgcacaagtttttggtaggtttgatagttattttgga 42221195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 34574450 - 34574526
Alignment:
Q  74 tttaactgtgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttgga 150  Q
    ||||| || ||||||||| ||||||||| ||| ||||||||  ||   ||||||||||| |||||| ||||||||||    
T  34574450 tttaattgcgctcaactgtagaagagaagcaaggtgcggttgcacgattttttggtaggtttgatggttattttgga 34574526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2077606 - 2077830
Alignment:
Q  1 tttcttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagaga 100  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||||||| ||||||| ||||||| |||||         ||| |||||||||||| |    
T  2077606 tttcttctatgagtttgttgttaatggggttttcaaatacttaggtggtgattttacctatgcttaattgcgc---------gctgaactgcagaagaaa 2077696  T
Q  101 aacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggt 200  Q
    |  |||||||||||| |   ||||| |||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||      
T  2077697 agtaaagtgcggttacaggagtttt-ggtaggtttgatgattattttggatgggttttgcaacggttttgcacaagacttgtttatgctattgctcagac 2077795  T
Q  201 gtttagactttgatttttggagatgactttttggt 235  Q
    |||||||||||| ||||||||||||||||||||||    
T  2077796 gtttagactttggtttttggagatgactttttggt 2077830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 10494690 - 10494542
Alignment:
Q  83 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 182  Q
    |||||||||||||||||||| |||||||||||| ||   ||||||||||| |||||| |||||||  | | ||||||||| |||||| ||||||| ||||    
T  10494690 gctcaactgcagaagagaaagaaagtgcggttacacggatttttggtaggtttgatggttattttataggggttttgcaatggtttggcacaagatttgt 10494591  T
Q  183 ttatgctattgctcaggtgtttagactttgatttttggagatgactttt 231  Q
    || |||||||||  ||| |||||||||||||||||||||||||||||||    
T  10494590 ttctgctattgcaaaggcgtttagactttgatttttggagatgactttt 10494542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 14351462 - 14351608
Alignment:
Q  83 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 182  Q
    |||||||||| |||||||| ||| ||||| |||  |  |||||||||||| |||||| |||||||||| | ||||||||| |||||| ||||||| ||||    
T  14351462 gctcaactgctgaagagaagcaatgtgcgattacgcgagtttttggtaggtttgatggttattttggaggggttttgcaatggtttggcacaagatttgt 14351561  T
Q  183 ttatgctattgctcaggtgtttagactttgatttttggagatgactt 229  Q
    || ||||||||| | ||||||||||||||  ||||||||||||||||    
T  14351562 ttctgctattgcgcgggtgtttagactttagtttttggagatgactt 14351608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 11814510 - 11814351
Alignment:
Q  75 ttaactgtgctcaactgcagaagagaaacaaagtgcggttatac--atgtttttggtaggattgatgattattttggatgagttttgcaacggtttgaca 172  Q
    ||||||||  ||||||||||||||||| |||||||| |||| ||  || |||||| |||| |||||| ||| |||||| | |||||||||| ||| | ||    
T  11814510 ttaactgtaatcaactgcagaagagaagcaaagtgcagttacacggatttttttgctaggtttgatggttactttggaggggttttgcaacagttaggca 11814411  T
Q  173 caagacttgtttatgctattgctcaggtgtttagactttgatttttggagatgacttttt 232  Q
    ||||| || ||| ||||||||| || | |||||||||| | ||||||||||| |||||||    
T  11814410 caagatttatttctgctattgcgcaagcgtttagacttaggtttttggagatcacttttt 11814351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 29099391 - 29099278
Alignment:
Q  123 ttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttggag 222  Q
    |||||||| | |||||| ||||||||||   ||||| ||||| | || ||||| | |||||||||||||||| ||   |||||||||||| |||||||||    
T  29099391 ttttggtaagtttgatggttattttggagaggtttttcaacgatatggcacaaaatttgtttatgctattgcgcaaacgtttagactttggtttttggag 29099292  T
Q  223 atgactttttggtg 236  Q
    ||||||| ||||||    
T  29099291 atgacttcttggtg 29099278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 27787029 - 27787143
Alignment:
Q  121 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 220  Q
    |||||||||||| |||||| ||||||||||   |||||  || |||||| |  |||| |||||| ||||||||| |||  |||| ||||||| |||||||    
T  27787029 gtttttggtaggtttgatggttattttggagaggttttttaatggtttggcttaagatttgtttctgctattgcgcagacgtttggactttggtttttgg 27787128  T
Q  221 agatgactttttggt 235  Q
    ||||||||| |||||    
T  27787129 agatgacttcttggt 27787143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11814645 - 11814604
Alignment:
Q  1 tttcttctatgagtttgttgttaatagagttttcaaatactt 42  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  11814645 tttcttctatgagtttgttgttaatagggttttcaaatactt 11814604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 26842258 - 26842343
Alignment:
Q  121 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttag 206  Q
    |||||||||||| |||||| ||| ||||||   ||||| ||||||| |||||||||| |||||| | ||||||| |||||||||||    
T  26842258 gtttttggtaggtttgatggttagtttggagaggtttttcaacggtatgacacaagatttgtttctcctattgcgcaggtgtttag 26842343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 25537564 - 25537469
Alignment:
Q  121 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgattttt 218  Q
    |||||||||||| |||||| |||||  |||   ||||| ||||||| |||||||||| |||||| ||||||| |  ||| ||||||||||||||||||    
T  25537564 gtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctatttcgtaggcgtttagactttgattttt 25537469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 43047877 - 43048097
Alignment:
Q  1 tttcttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagaga 100  Q
    ||||||||||||||||||||||||| | |||||| ||||||| |||||||| |||||  |||||||||||||||           |||||||||||||||    
T  43047877 tttcttctatgagtttgttgttaatggggttttctaatacttaggtggtgattttactcgtgcttaactgcgct-----------caactgcagaagaga 43047965  T
Q  101 aacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggt 200  Q
    ||||||||||||||| |||  ||||||||||| |||||| ||||||||||||  |||||||||||||| |||||||| ||||||||||||||||||  |     
T  43047966 aacaaagtgcggttacacagatttttggtaggtttgatggttattttggatggattttgcaacggttttacacaagatttgtttatgctattgctcgtgc 43048065  T
Q  201 gtttagactttgatttttggagatgacttttt 232  Q
     ||||||||||| |||||||||||||||||||    
T  43048066 atttagactttggtttttggagatgacttttt 43048097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 235
Target Start/End: Complemental strand, 24717907 - 24717747
Alignment:
Q  75 ttaactgtgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacaca 174  Q
    ||||||| ||||||||||| ||||||| |||||||||||||      |||||||||||||||||| |||||||||||| |||||||||| ||||| ||||    
T  24717907 ttaactgcgctcaactgcaaaagagaagcaaagtgcggttacctggttttttggtaggattgatggttattttggatgggttttgcaactgtttggcaca 24717808  T
Q  175 agacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttggt 235  Q
    |||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  24717807 agacttgtttctactattgctcaggcgtttagactttggtttttggagatgactttttggt 24717747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 32979074 - 32978960
Alignment:
Q  121 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 220  Q
    ||||||||| || |||||| ||||||||||   |||||  ||| ||||| ||||||| |||||||||  ||||| |||| |||| ||||||| |||||||    
T  32979074 gtttttggtgggtttgatggttattttggagaggttttttaacagtttggcacaagatttgtttatgtcattgcgcaggcgtttggactttggtttttgg 32978975  T
Q  221 agatgactttttggt 235  Q
    ||||||||| |||||    
T  32978974 agatgacttcttggt 32978960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 21590826 - 21590933
Alignment:
Q  122 tttttggtaggattgatgattattttggatgag-ttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 220  Q
    ||||||||||| ||| || |||||||||| ||| |||| | |||||||| ||||||| |||||| ||||||||| ||   ||||||| |||| |||||||    
T  21590826 tttttggtaggtttgttggttattttgga-gagatttttctacggtttggcacaagatttgtttctgctattgcacaaacgtttagaatttgttttttgg 21590924  T
Q  221 agatgactt 229  Q
    |||||||||    
T  21590925 agatgactt 21590933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 26712022 - 26711907
Alignment:
Q  80 tgtgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacac-aagac 178  Q
    ||||||||| ||| |||||||| ||| ||||||||| |   |||||||||||| |||||| ||||||| || |  |||| |||||||||| ||| ||||     
T  26712022 tgtgctcaagtgcggaagagaatcaaggtgcggttacatgggtttttggtaggtttgatggttattttagagggatttttcaacggtttggcactaagat 26711923  T
Q  179 ttgtttatgctattgc 194  Q
    ||||||  ||||||||    
T  26711922 ttgtttccgctattgc 26711907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32979158 - 32979120
Alignment:
Q  1 tttcttctatgagtttgttgttaatagagttttcaaata 39  Q
    |||||||||||||||||||||| || |||||||||||||    
T  32979158 tttcttctatgagtttgttgttgatggagttttcaaata 32979120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 24717961 - 24717897
Alignment:
Q  10 tgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgct 74  Q
    |||||||||||||||| | ||| |||||| | | ||| |||| ||||| ||||||||||||||||    
T  24717961 tgagtttgttgttaattgggttatcaaatccgtaggtcgtgattttacttgtgcttaactgcgct 24717897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2592 - 2815
Alignment:
Q  1 tttcttctatgagtttgttgttaatagagttttcaaatacttcggtggtgactttacctgtgcttaactgcgctttaactgtgctcaactgcagaagaga 100  Q
    |||||||||||||||||||||| || |  ||||||||||||| | |||||| |||||||||||||||| |||||            ||||||||||||||    
T  2592 tttcttctatgagtttgttgttcattggattttcaaatacttagctggtgattttacctgtgcttaaccgcgctg-----------aactgcagaagaga 2680  T
Q  101 aacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggt 200  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||| |||| | |||||||||||||| |||||||||||||| ||||||||||||||     
T  2681 agcaaagtgcggttacatgagtttttggtaggattgatgattattttagatgggatttgcaacggtttggcacaagacttgtttctgctattgctcaggc 2780  T
Q  201 gtttagactttgatttttggagatgactttttggt 235  Q
    ||||||||||||  |||||||||||| ||||||||    
T  2781 gtttagactttgggttttggagatgaatttttggt 2815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 75 - 235
Target Start/End: Complemental strand, 10772754 - 10772595
Alignment:
Q  75 ttaactgtgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacaca 174  Q
    ||||||| | |||||| |||||||||| |||| ||| |||| ||  |||||||||||| |||||| |||||||||||| |||||||||||||||| ||||    
T  10772754 ttaactgcgttcaactacagaagagaagcaaa-tgcagttacacgggtttttggtaggtttgatggttattttggatgggttttgcaacggtttggcaca 10772656  T
Q  175 agacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttggt 235  Q
    |||||||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||    
T  10772655 agacttgtttctgccattgctcaagcgtttagactttgatttttggagatgactttttggt 10772595  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 75 - 235
Target Start/End: Complemental strand, 30845283 - 30845123
Alignment:
Q  75 ttaactgtgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacaca 174  Q
    ||||||| ||||||||| ||||||||| ||| |||||||||      ||||||||||| |||||| |||||||||| | |||||||||||||||||||||    
T  30845283 ttaactgcgctcaactgtagaagagaagcaaggtgcggttacctggatttttggtaggtttgatggttattttggaggggttttgcaacggtttgacaca 30845184  T
Q  175 agacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttggt 235  Q
    ||| |||||| |||||||||   ||||||||||||||| |||||| |||||||||||||||    
T  30845183 agatttgtttctgctattgcgtgggtgtttagactttggtttttgaagatgactttttggt 30845123  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 24350458 - 24350610
Alignment:
Q  83 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 182  Q
    |||||||| |||||||||| ||| ||| | ||| ||  |||||||||| | |||||| |||||||||| | |||||||||||||||  ||||| | ||||    
T  24350458 gctcaactacagaagagaagcaatgtgtgattacacgagtttttggtaagtttgatggttattttggaggggttttgcaacggtttagcacaaaatttgt 24350557  T
Q  183 ttatgctattgctcaggtgtttagactttgatttttggagatgactttttggt 235  Q
    || ||||||||| | || |||||||||||  |||||||||||||||| |||||    
T  24350558 ttctgctattgcgcgggagtttagactttagtttttggagatgacttcttggt 24350610  T

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Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 24843039 - 24842888
Alignment:
Q  83 gctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgt 182  Q
    ||||||||||||||||||| ||| ||||||||| ||  |||||||||||| |||||| || ||||||| | ||||  |||| ||||  ||||||| ||||    
T  24843039 gctcaactgcagaagagaagcaaggtgcggttacacgggtttttggtaggtttgatggttcttttgga-gggtttaacaacagtttagcacaagatttgt 24842941  T
Q  183 ttatgctattgctcaggtgtttagactttgatttttggagatgactttttggt 235  Q
    || ||||| ||||| |||||||| || ||| ||||||||| ||||||||||||    
T  24842940 ttttgctactgctcgggtgtttaaacgttggtttttggagctgactttttggt 24842888  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 10670327 - 10670415
Alignment:
Q  141 ttattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttggagatgactt 229  Q
    ||||||||||   ||||| |||||||||||||||||| |||||| ||||||||| ||||  |||||||||||  ||||||| |||||||    
T  10670327 ttattttggagaggtttttcaacggtttgacacaagatttgtttctgctattgcgcaggcatttagactttggattttggatatgactt 10670415  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 52635535 - 52635391
Alignment:
Q  84 ctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtt 183  Q
    |||| ||||||||||||| ||| ||| | ||| ||  |||||||||||| |||||| |||||||||| || |||||||||| |||| ||||||| |||||    
T  52635535 ctcacctgcagaagagaagcaatgtgtgattacacgagtttttggtaggtttgatggttattttggagga-ttttgcaacgatttggcacaagatttgtt 52635437  T
Q  184 tatgctattgctcaggtgtttagactttgatttttggagatgactt 229  Q
    | ||||||||  | | ||||||||||||  |||||||| |||||||    
T  52635436 tctgctattgagcggatgtttagactttagtttttggaaatgactt 52635391  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 45872979 - 45872871
Alignment:
Q  121 gtttttggtaggattgatgattattttggatgagttttgcaacggtttgacacaagacttgtttatgctattgctcaggtgtttagactttgatttttgg 220  Q
    |||||||||||| ||| || ||||||||||   |||||||||||||||   |||||| |||||| ||||||||| || | |||||||||||| |||||||    
T  45872979 gtttttggtaggtttggtggttattttggagacgttttgcaacggtttcgtacaagatttgtttctgctattgcgcatgcgtttagactttggtttttgg 45872880  T
Q  221 agatgactt 229  Q
    |||||||||    
T  45872879 agatgactt 45872871  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 55728446 - 55728390
Alignment:
Q  179 ttgtttatgctattgctcaggtgtttagactttgatttttggagatgactttttggt 235  Q
    |||||| ||||||||| | ||||||||||||||  |||||||||||||||| |||||    
T  55728446 ttgtttctgctattgcgcgggtgtttagactttagtttttggagatgacttcttggt 55728390  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 12130396 - 12130358
Alignment:
Q  197 aggtgtttagactttgatttttggagatgactttttggt 235  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  12130396 aggtgtttagactttggtttttggagatgacttattggt 12130358  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 55728526 - 55728451
Alignment:
Q  74 tttaactgtgctcaactgcagaagagaaacaaagtgcggttatacatgtttttggtaggattgatgattattttgga 150  Q
    ||||| || |||||||||||||||| || ||||||||| ||| ||  | |||||||||| |||||| ||||||||||    
T  55728526 tttaattgcgctcaactgcagaagaaaagcaaagtgcgattacacgag-ttttggtaggtttgatggttattttgga 55728451  T

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Target: scaffold0083 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 2963 - 2886
Alignment:
Q  160 caacggtttgacacaagacttgtttatgctattgctcagg--tgtttagactttgatttttggagatgactttttggt 235  Q
    |||| ||||| ||||||| |||||| ||||||||| | ||  ||||||||||||| ||||||||||||| ||||||||    
T  2963 caacagtttggcacaagatttgtttctgctattgcacgggcgtgtttagactttggtttttggagatgaatttttggt 2886  T

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