View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12929_low_5 (Length: 647)

Name: NF12929_low_5
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12929_low_5
NF12929_low_5
[»] chr4 (15 HSPs)
chr4 (18-637)||(25789889-25790511)
chr4 (36-80)||(23870033-23870077)
chr4 (31-81)||(7540507-7540557)
chr4 (34-80)||(47059676-47059722)
chr4 (34-80)||(47082080-47082126)
chr4 (36-72)||(38087653-38087689)
chr4 (41-77)||(55147930-55147966)
chr4 (36-86)||(29118450-29118501)
chr4 (50-80)||(5627482-5627512)
chr4 (38-80)||(55236267-55236309)
chr4 (36-84)||(36071656-36071705)
chr4 (43-80)||(40307473-40307510)
chr4 (36-80)||(6137190-6137234)
chr4 (209-241)||(23593506-23593538)
chr4 (36-80)||(25779741-25779785)
[»] chr8 (8 HSPs)
chr8 (36-93)||(26835693-26835751)
chr8 (34-80)||(13580455-13580501)
chr8 (34-80)||(4350768-4350814)
chr8 (36-86)||(22930300-22930351)
chr8 (36-80)||(28376643-28376687)
chr8 (36-76)||(34142014-34142054)
chr8 (36-81)||(4311559-4311604)
chr8 (37-85)||(38075786-38075834)
[»] chr7 (8 HSPs)
chr7 (34-80)||(9429433-9429479)
chr7 (36-80)||(33480589-33480633)
chr7 (39-80)||(30095862-30095903)
chr7 (39-79)||(21292832-21292872)
chr7 (36-80)||(35812600-35812644)
chr7 (36-79)||(15134550-15134593)
chr7 (36-86)||(21136105-21136155)
chr7 (39-81)||(37996494-37996536)
[»] chr6 (8 HSPs)
chr6 (39-82)||(33607163-33607206)
chr6 (34-80)||(10668975-10669021)
chr6 (165-299)||(32432831-32432967)
chr6 (36-86)||(12174299-12174350)
chr6 (34-72)||(6549791-6549829)
chr6 (39-76)||(33344786-33344823)
chr6 (39-76)||(35122053-35122090)
chr6 (199-296)||(7399328-7399428)
[»] chr2 (6 HSPs)
chr2 (36-85)||(4206661-4206710)
chr2 (34-81)||(40877022-40877069)
chr2 (36-78)||(5163780-5163822)
chr2 (46-80)||(16647943-16647977)
chr2 (35-80)||(17271361-17271406)
chr2 (34-82)||(18197322-18197370)
[»] chr5 (4 HSPs)
chr5 (36-80)||(12263747-12263791)
chr5 (36-77)||(7887286-7887327)
chr5 (33-80)||(18916033-18916080)
chr5 (36-93)||(39542382-39542440)
[»] chr1 (8 HSPs)
chr1 (50-86)||(35405303-35405339)
chr1 (34-85)||(1153821-1153873)
chr1 (36-80)||(1240413-1240457)
chr1 (36-80)||(23897994-23898038)
chr1 (36-71)||(8246819-8246854)
chr1 (34-68)||(3265562-3265596)
chr1 (41-86)||(22667683-22667729)
chr1 (50-85)||(40880-40916)
[»] chr3 (3 HSPs)
chr3 (36-86)||(11383571-11383621)
chr3 (200-241)||(17648490-17648531)
chr3 (36-80)||(27541167-27541211)
[»] scaffold0531 (1 HSPs)
scaffold0531 (36-68)||(9699-9731)


Alignment Details
Target: chr4 (Bit Score: 575; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 18 - 637
Target Start/End: Complemental strand, 25790511 - 25789889
Alignment:
Q  18 atattacacttgacacaatactaactattaaataaaaataataattttggtgcccctaaaaaatggtgctatgggcggtggtccctttcgctcatgctca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25790511 atattacacttgacacaatactaactattaaataaaaataataattttggtgcccctaaaaaatggtgctatgggcggtggtccctttcgctcatgctca 25790412  T
Q  118 aagtcacccctaagtgtacttttgtataaggggtaaatttgtttggggagtttcttttcccacctttcaagcttctcgtaagtcctacaacattttagat 217  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25790411 aagccacccctaagtgtacttttgtacaaggggtaaatttgtttggggagtttcttttcccacctttcaagcttctcgcaagtcctacaacattttagat 25790312  T
Q  218 tatataatctgaaaggtgtaaaaa-attcaaaaaccctccataaaccct-cattttttggatattaaaatctaaaatagggtgcgtgagaaacttagaag 315  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25790311 tatataatctgaaaggtgtaaaaatgttcaaaaaccctccataaaccctccattttttggatattaaaatctaaaatagggtgcgtgagaaacttagaag 25790212  T
Q  316 gtgagaaaagaacttccatttgttaaatactagtgccagcccaatgataaacgaggcctacaacaaattgtgtgaagagattttcttttcccactctccg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25790211 gtgagaaaagaacttccatttgttaaatactagtgccagcccaatgataaacgaggcctacaacaaattgtgtgaagagattttcttttcccactctccg 25790112  T
Q  416 cacatctcccgcgccctccaaaattctctaagtaccttcg-ctctcgttcggattatataatcaaaatgaagaccacaacccaaggaacaatacataagc 514  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25790111 cacatctcccgcgccctccaaaattctctcagtaccttcgtttctcgttcggattatataatcaaaatgaagaccacaacccaaggaacaatacataagc 25790012  T
Q  515 ccttcaacaacttcatccttgtcttcactcatcttcaattttatgtgactcaaacgccttattattcacgtcattaattttctttagcaaatgtaatata 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25790011 ccttcaacaacttcatccttgtcttcactcatcttcaattttatgtgactcaaacgccttattattcacgtcattaattttctttagcaaatgtaatata 25789912  T
Q  615 acttcttttgctcggatgttcat 637  Q
    |||||||||||||||||||||||    
T  25789911 acttcttttgctcggatgttcat 25789889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 23870077 - 23870033
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||    
T  23870077 tactaactactaagtaaaaataataattttggtgcccctaaaaaa 23870033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 7540507 - 7540557
Alignment:
Q  31 cacaatactaactattaaataaaaataataattttggtgcccctaaaaaat 81  Q
    ||||| |||||||| ||| ||||||||||||||||| ||||||||||||||    
T  7540507 cacaaaactaactaataagtaaaaataataattttgatgcccctaaaaaat 7540557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 47059722 - 47059676
Alignment:
Q  34 aatactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  47059722 aatactaactaataagtaaaaataataattttggtgccccttaaaaa 47059676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 47082080 - 47082126
Alignment:
Q  34 aatactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  47082080 aatactaactaataagtaaaaataataattttggtgccccttaaaaa 47082126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 38087689 - 38087653
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgccc 72  Q
    ||||||||||||| |||||||||||||||||||||||    
T  38087689 tactaactattaagtaaaaataataattttggtgccc 38087653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 55147930 - 55147966
Alignment:
Q  41 actattaaataaaaataataattttggtgcccctaaa 77  Q
    |||||||| ||||||||||||||||||||||||||||    
T  55147930 actattaagtaaaaataataattttggtgcccctaaa 55147966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 29118501 - 29118450
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgccccta-aaaaatggtgc 86  Q
    ||||||||| || ||||||||||||||||||||||||| | |||||||||||    
T  29118501 tactaactactacataaaaataataattttggtgccccaataaaaatggtgc 29118450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 80
Target Start/End: Complemental strand, 5627512 - 5627482
Alignment:
Q  50 taaaaataataattttggtgcccctaaaaaa 80  Q
    |||||||||||||||||||||||||||||||    
T  5627512 taaaaataataattttggtgcccctaaaaaa 5627482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 55236309 - 55236267
Alignment:
Q  38 ctaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  55236309 ctaactactaaataaaaataataattttgatgcccttaaaaaa 55236267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 36071656 - 36071705
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgccccta-aaaaatggt 84  Q
    |||||||||| || |||||||||||||||| ||||||||| |||||||||    
T  36071656 tactaactatcaagtaaaaataataattttagtgcccctagaaaaatggt 36071705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 40307510 - 40307473
Alignment:
Q  43 tattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  40307510 tattaagtaaaaataataattttggttcccctaaaaaa 40307473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 6137234 - 6137190
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||||| ||||||||||||||||||||  ||| |||||||||    
T  6137234 tactaactactaaataaaaataataattttaatgctcctaaaaaa 6137190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 23593506 - 23593538
Alignment:
Q  209 attttagattatataatctgaaaggtgtaaaaa 241  Q
    ||||||||||||||| |||||||||||||||||    
T  23593506 attttagattatatagtctgaaaggtgtaaaaa 23593538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 25779741 - 25779785
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||||| ||| ||||||||||||||||||||  |||||||||    
T  25779741 tactaactaataagtaaaaataataattttggtgtacctaaaaaa 25779785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 26835693 - 26835751
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccct-aaaaaatggtgctatgggc 93  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  26835693 tactaactattaagtaaaaataataattttggtgcccctaaaaaaatggtgctatgggc 26835751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 13580455 - 13580501
Alignment:
Q  34 aatactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  13580455 aatactaactattaagtaaaaataataattttggtgcccctaaaaaa 13580501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 4350768 - 4350814
Alignment:
Q  34 aatactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  4350768 aatactaactactaaataaaaataataattttggtgcctctaaaaaa 4350814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 22930351 - 22930300
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccct-aaaaaatggtgc 86  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  22930351 tactaactattaagtaaaaattataattttggtgcccctgaaaaaatggtgc 22930300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 28376687 - 28376643
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||    
T  28376687 tactaactactaagtaaaaataataattttggtgccgctaaaaaa 28376643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 34142054 - 34142014
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaa 76  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  34142054 tactaactactaaataaaaataatagttttggtgcccctaa 34142014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 4311559 - 4311604
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaat 81  Q
    |||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  4311559 tactaactatcaaatataaataataattttgatgcccctcaaaaat 4311604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 38075786 - 38075834
Alignment:
Q  37 actaactattaaataaaaataataattttggtgcccctaaaaaatggtg 85  Q
    |||||| | ||| ||||||||||||||||| || |||||||||||||||    
T  38075786 actaacaactaagtaaaaataataattttgatgtccctaaaaaatggtg 38075834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 9429433 - 9429479
Alignment:
Q  34 aatactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  9429433 aatactaactattaaataaaaatactaattttggtgcccctaaaaaa 9429479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 33480589 - 33480633
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  33480589 tactaactattacataaaaataataattttggtgcccctataaaa 33480633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 30095862 - 30095903
Alignment:
Q  39 taactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    |||||| ||| |||||||||||||||||||||||||||||||    
T  30095862 taactactaagtaaaaataataattttggtgcccctaaaaaa 30095903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 21292832 - 21292872
Alignment:
Q  39 taactattaaataaaaataataattttggtgcccctaaaaa 79  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  21292832 taactactaagtaaaaataataattttggtgcccctaaaaa 21292872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 35812644 - 35812600
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||    
T  35812644 tactaattattaagtaaaaataataattttgatgcccctaaaaaa 35812600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 15134550 - 15134593
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaa 79  Q
    ||||| ||| ||| ||||||||||||||||||||||||||||||    
T  15134550 tactagctactaagtaaaaataataattttggtgcccctaaaaa 15134593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 21136155 - 21136105
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaatggtgc 86  Q
    ||||||||| ||| ||| |||||| |||||||||||| |||||||||||||    
T  21136155 tactaactactaactaagaataatcattttggtgcccttaaaaaatggtgc 21136105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 37996536 - 37996494
Alignment:
Q  39 taactattaaataaaaataataattttggtgcccctaaaaaat 81  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||    
T  37996536 taactactaagtaaaaataataattttggtgcccataaaaaat 37996494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 33607163 - 33607206
Alignment:
Q  39 taactattaaataaaaataataattttggtgcccctaaaaaatg 82  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  33607163 taactattaaataaaaataataattttggtgtccctaaaaaatg 33607206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 10668975 - 10669021
Alignment:
Q  34 aatactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  10668975 aatactaactaataagtaaaaataataattttggtgcccctaaaaaa 10669021  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 299
Target Start/End: Complemental strand, 32432967 - 32432831
Alignment:
Q  165 gagtttcttttcccacctttcaagcttctcgtaagtcctacaacattttagattatataatctgaaaggtgtaaaaa-attcaaaaaccctccataaacc 263  Q
    ||||||||||||||||  | |||||||||||    |||||||||||||  |||||||||||   |||||||||||||  ||||  || ||||||||||||    
T  32432967 gagtttcttttcccacactccaagcttctcgcgtatcctacaacatttcggattatataatacaaaaggtgtaaaaacgttcaggaatcctccataaacc 32432868  T
Q  264 ct-cattttttggatattaaaatctaaaatagggtgc 299  Q
     | ||||||| |||| ||||||||  |||||||||||    
T  32432867 atccatttttcggattttaaaatccgaaatagggtgc 32432831  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 12174350 - 12174299
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcc-cctaaaaaatggtgc 86  Q
    ||||||||| ||| |||||||||||||||||||||| | |||||||||||||    
T  12174350 tactaactactaagtaaaaataataattttggtgcctcttaaaaaatggtgc 12174299  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 6549791 - 6549829
Alignment:
Q  34 aatactaactattaaataaaaataataattttggtgccc 72  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  6549791 aatacaaactattaaataaaaataataatcttggtgccc 6549829  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 33344823 - 33344786
Alignment:
Q  39 taactattaaataaaaataataattttggtgcccctaa 76  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  33344823 taactactaagtaaaaataataattttggtgcccctaa 33344786  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 35122053 - 35122090
Alignment:
Q  39 taactattaaataaaaataataattttggtgcccctaa 76  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  35122053 taactactaagtaaaaataataattttggtgcccctaa 35122090  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 7399328 - 7399428
Alignment:
Q  199 gtcctacaacattttagattatataatctgaaaggtgtaaaaa-attcaaaaa-ccctccataaa-ccctcattttttggatattaaaatctaaaatagg 295  Q
    |||||||||||||||||||| |||| ||  |||||| ||||||  || ||||| ||||||||||| || | ||||||||||| ||||||||  |||||||    
T  7399328 gtcctacaacattttagattgtatattccaaaaggtctaaaaatgttgaaaaatccctccataaagcctttattttttggattttaaaatccgaaatagg 7399427  T
Q  296 g 296  Q
    |    
T  7399428 g 7399428  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 4206661 - 4206710
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaatggtg 85  Q
    ||||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  4206661 tactaactactaagtaaatataataattttggtgcccctaaaaaatggtg 4206710  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 40877022 - 40877069
Alignment:
Q  34 aatactaactattaaataaaaataataattttggtgcccctaaaaaat 81  Q
    |||||||||||  || |||||||||||||||||||| |||||||||||    
T  40877022 aatactaactaccaagtaaaaataataattttggtgtccctaaaaaat 40877069  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 5163822 - 5163780
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaa 78  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||    
T  5163822 tactaactactaagtaaaaataataattttgatgcccctaaaa 5163780  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 16647943 - 16647977
Alignment:
Q  46 taaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||||||||||||||||| |||||||||||||    
T  16647943 taaataaaaataataattttgatgcccctaaaaaa 16647977  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 17271361 - 17271406
Alignment:
Q  35 atactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||| |||| ||| ||||||||||||||||||| |||||||||||    
T  17271361 atactgactactaagtaaaaataataattttggtacccctaaaaaa 17271406  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 18197370 - 18197322
Alignment:
Q  34 aatactaactattaaataaaaataataattttggtgcccctaaaaaatg 82  Q
    |||||||||||| || ||||||||||||||||| ||||  |||||||||    
T  18197370 aatactaactatcaagtaaaaataataattttgatgccaataaaaaatg 18197322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 12263747 - 12263791
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||    
T  12263747 tactaaccattaagtaaaaataataattttggtgcccctaaaaaa 12263791  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 7887286 - 7887327
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaa 77  Q
    ||||||||| ||| ||||||||||||||||||||||||||||    
T  7887286 tactaactactaagtaaaaataataattttggtgcccctaaa 7887327  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 18916080 - 18916033
Alignment:
Q  33 caatactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    |||||||||||||||| ||||| ||||||||||||| | |||||||||    
T  18916080 caatactaactattaagtaaaagtaataattttggtactcctaaaaaa 18916033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 39542440 - 39542382
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccct-aaaaaatggtgctatgggc 93  Q
    ||||||||| ||  ||||||||||||||||| |||||||  ||||||||||||||||||    
T  39542440 tactaactactacgtaaaaataataattttgatgcccctgtaaaaatggtgctatgggc 39542382  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 35405339 - 35405303
Alignment:
Q  50 taaaaataataattttggtgcccctaaaaaatggtgc 86  Q
    |||||||||||||||||||||||||||||||||||||    
T  35405339 taaaaataataattttggtgcccctaaaaaatggtgc 35405303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 1153821 - 1153873
Alignment:
Q  34 aatactaactattaaataaaaataataattttggtg-cccctaaaaaatggtg 85  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||    
T  1153821 aatactaactactaaataaaaataataattgtggtgccccctaaaagatggtg 1153873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 1240457 - 1240413
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||||| ||| |||||||||||||||| ||||||||||||||    
T  1240457 tactaactactaagtaaaaataataattttagtgcccctaaaaaa 1240413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 23897994 - 23898038
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||    
T  23897994 tactaactactaagtaaaaatgataattttggtgcccctaaaaaa 23898038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 8246819 - 8246854
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcc 71  Q
    ||||||||||||| ||||||||||||||||||||||    
T  8246819 tactaactattaagtaaaaataataattttggtgcc 8246854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 3265562 - 3265596
Alignment:
Q  34 aatactaactattaaataaaaataataattttggt 68  Q
    ||||||||||||||| |||||||||||||||||||    
T  3265562 aatactaactattaagtaaaaataataattttggt 3265596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 22667683 - 22667729
Alignment:
Q  41 actattaaataaaaataataattttggtgcccctaaa-aaatggtgc 86  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||||    
T  22667683 actactaaataaaaataataatttttgtgcccctaaataaatggtgc 22667729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 40880 - 40916
Alignment:
Q  50 taaaaataataattttggtgcccctaa-aaaatggtg 85  Q
    ||||||||||||||||||||||||||| |||||||||    
T  40880 taaaaataataattttggtgcccctaataaaatggtg 40916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 11383621 - 11383571
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaatggtgc 86  Q
    ||||||||| |||||||||||||||||||||||||||  ||||| ||||||    
T  11383621 tactaactactaaataaaaataataattttggtgccctaaaaaagtggtgc 11383571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 17648490 - 17648531
Alignment:
Q  200 tcctacaacattttagattatataatctgaaaggtgtaaaaa 241  Q
    |||||||||||||||||||||||||||  |||||||||||||    
T  17648490 tcctacaacattttagattatataatccaaaaggtgtaaaaa 17648531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 27541167 - 27541211
Alignment:
Q  36 tactaactattaaataaaaataataattttggtgcccctaaaaaa 80  Q
    |||||| || ||||||||||||||||||||| |||||||||||||    
T  27541167 tactaattactaaataaaaataataattttgatgcccctaaaaaa 27541211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 9731 - 9699
Alignment:
Q  36 tactaactattaaataaaaataataattttggt 68  Q
    ||||||||| |||||||||||||||||||||||    
T  9731 tactaactactaaataaaaataataattttggt 9699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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