View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_52 (Length: 248)
Name: NF12929_low_52
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 38982982 - 38983214
Alignment:
| Q |
2 |
agaaaatcatgtagctgttggaggaagggtaagagggttgtcgcgatgttggtagagacaaagggataatatggtggtgttagactaaattctttggcat |
101 |
Q |
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| T |
38982982 |
agaaaatcatgtagctgttggaggaagggtaagaggattgtcgtgatgttggtagagacaaagggataatatggtggtgttagactaaattctttggcat |
38983081 |
T |
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| Q |
102 |
cattgttttagactgaacattaatttggagaaactcattggcatcccactcttacttagattgtaaactcacgattgttcgttacacaaacaagaaaaga |
201 |
Q |
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| T |
38983082 |
cattgttttagactgaacattaatttggaaaaactcattggcatcacactcttagttatattgtaaactcacgattgttagttacacaaacaagaaaaga |
38983181 |
T |
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| Q |
202 |
tgagattttaacaatggcttgatgtttgtggtg |
234 |
Q |
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| T |
38983182 |
tgagattttaacaatggcttgatgtttgtggtg |
38983214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 12139758 - 12139526
Alignment:
| Q |
2 |
agaaaatcatgtagctgttggaggaagggtaagagggttgtcgcgatgttggtagagacaaagggataatatggtggtgttagactaaattctttggcat |
101 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12139758 |
agaaaatcatgtagctgttggaggaagggtaagagagttgtcgtaatgttggtagagacaaagggataatatggtggtgttagactaaattctttggcat |
12139659 |
T |
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| Q |
102 |
cattgttttagactgaacattaatttggagaaactcattggcatcccactcttacttagattgtaaactcacgattgttcgttacacaaacaagaaaaga |
201 |
Q |
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| T |
12139658 |
cattgttttagactgaacattaatttggagaaactcattggcatcacactcttagttagattgtaaactcaccattgttagttacacaaacaagaaaata |
12139559 |
T |
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| Q |
202 |
tgagattttaacaatggcttgatgtttgtggtg |
234 |
Q |
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| T |
12139558 |
tgagattttaacaatggcttgatgtttgtggtg |
12139526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 46097675 - 46097908
Alignment:
| Q |
2 |
agaaaatcatgtagctgttggaggaagggtaagagggttgtcgcgatgttggtagagacaaagggataatatggtggtgttagactaaattctttggcat |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||| |
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| T |
46097675 |
agaaaatcatgtagctgttggaggaagggtaagagggttgtcgtgatgttggtggagacaaagggatagtatggtggtgttagactaaatttattgacat |
46097774 |
T |
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| Q |
102 |
cattgttttagactgaacattaatttggagaaactcattggcatcccactcttacttagattgtaaact--cacgattgttcgttacacaaacaagaaaa |
199 |
Q |
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|||||||||| ||||||||||||||||||| || |||||||| | |||| ||| |||||||||||||| |||||||||| |||||||||||||| ||| |
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| T |
46097775 |
cattgttttaaactgaacattaatttggag-aattcattggcgccacactgttagttagattgtaaactcacacgattgttagttacacaaacaaggaaa |
46097873 |
T |
|
| Q |
200 |
gatgagattttaacaatggcttgatgtttgtggtg |
234 |
Q |
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| T |
46097874 |
gatgagattttaacaatggcttgatgttggtggtg |
46097908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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