View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_54 (Length: 244)
Name: NF12929_low_54
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 6888331 - 6888550
Alignment:
| Q |
1 |
ctatctttcattttcttttctcattgacaatggaaatagaaaagctcttcattgaaattgtggttataacacaatagttaatgatatttctttttagaca |
100 |
Q |
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| T |
6888331 |
ctatctttcattttcttttctcattgacaatggaaatagaaaagctcttcattgaaattgtggttataacacaatagttaatgatatttctttgtagaca |
6888430 |
T |
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| Q |
101 |
taaaatataaagataagaaacttacatgagaaaaccctaagtaacnnnnnnnnctgttcaaaattcaaattaaattagggcaaacttatccttctttcat |
200 |
Q |
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| T |
6888431 |
aaaaacataaagataagaaacttacatgagaaaaccctaagtaacttttttttctg-------ttcaaattgaattagggcaaacttatccttctttcat |
6888523 |
T |
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| Q |
201 |
tattgagattcatttgaagtatttact |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
6888524 |
tattgagattcatttgaagtatttact |
6888550 |
T |
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