View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_55 (Length: 243)
Name: NF12929_low_55
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 43831722 - 43831925
Alignment:
| Q |
18 |
tgactacgtacctatactgaattcaaagactactacaacggtgagaatagcccaaacagagttacgaccaatatctttgttgaagggttctttgagaaaa |
117 |
Q |
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| T |
43831722 |
tgactacgtacctatactgaattcaaagacaactacaacggtgagaatagcccaaacagagttacgaccaatatctttgttgaagggttctttgagaaaa |
43831821 |
T |
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| Q |
118 |
atcaaaagggagataatagtcaaagcaagacccatttttgcagcaaatataatcttccttggatcagaccgacccatttgacatgccttgttagcaatac |
217 |
Q |
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| T |
43831822 |
atcaaaagggagataatagtcaaagcaagacccatttttgcggcaaatataatcttccttggatcagaccgacccatttgacatgccttgttagcaatac |
43831921 |
T |
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| Q |
218 |
cctc |
221 |
Q |
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|||| |
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| T |
43831922 |
cctc |
43831925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 43816822 - 43816996
Alignment:
| Q |
22 |
tacgtacctatactgaattcaaagactactacaacggtgagaatagcccaaacagagttacgaccaatatctttgttgaagggttctttgagaaaaatca |
121 |
Q |
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| T |
43816822 |
tacgtacctatactgaattcaaagactacgacaacagttagaatagcccaaacagagtgacggctaatatcatttttgaagggttctttaaggaaaatca |
43816921 |
T |
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| Q |
122 |
aaagggagataatagtcaaagcaagacccatttttgcagcaaatataatcttccttggatcagaccgacccattt |
196 |
Q |
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| T |
43816922 |
aaagggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccattt |
43816996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 43824765 - 43824932
Alignment:
| Q |
23 |
acgtacctatactgaattcaaagactactacaacggtgagaatagcccaaacagagttacgaccaatatctttgttgaagggttctttgagaaaaatcaa |
122 |
Q |
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||||||||||||||||||||||||| || || ||||||||||||||||||||||| | ||| || ||| |||||||||||| ||||||||||| |
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| T |
43824765 |
acgtacctatactgaattcaaagacgacgacgacggtgagaatagcccaaacagaatgacgggtaaaatc------gaagggttctttaagaaaaatcaa |
43824858 |
T |
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| Q |
123 |
aagggagataatagtcaaagcaagacccatttttgcagcaaatataatcttccttggatcagaccgacccattt |
196 |
Q |
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||||||||||| | |||||||||||||||||| ||||| || || ||||||||||||||||| |||||||||| |
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| T |
43824859 |
aagggagataagggccaaagcaagacccattttagcagcgaaaatgatcttccttggatcagaacgacccattt |
43824932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 31805467 - 31805414
Alignment:
| Q |
26 |
tacctatactgaattcaaagactactacaacggtgagaatagcccaaacagagt |
79 |
Q |
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| T |
31805467 |
tacctatactgaactcaaagacgacaacaacagtaagaatagcccaaacagagt |
31805414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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