View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_56 (Length: 241)
Name: NF12929_low_56
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_56 |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 1982276 - 1982066
Alignment:
| Q |
17 |
aaaaagaagttgagccacatgaagaagaaacttagtgtctaagagtaacaccttttaagaaaccacatgacaacaccacttcaacgccaccgccgaaggc |
116 |
Q |
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| T |
1982276 |
aaaaagaagttgagccacatgaagaagaaacttagtgtctaagagtaacgccttttaagaaaccacatgacaacaccacttcaacgccaccgccgaaggc |
1982177 |
T |
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| Q |
117 |
accaccacacaacacaactatgatgtctctgccgcaattgaagtcattgaatccaccattgaagcaactgaatctgctcaaaactcagccaccatcatcg |
216 |
Q |
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| T |
1982176 |
accaccacacaacacaactatgatgtctctgctgcaattgaagtcattgaatccaccattgaagcaactgaatctgctcaaaactcagccaccatcatcg |
1982077 |
T |
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| Q |
217 |
tcgatctctgc |
227 |
Q |
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| T |
1982076 |
tcgatctctgc |
1982066 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 37089594 - 37089535
Alignment:
| Q |
175 |
ttgaagcaactgaatctgctcaaaactcagccaccatcatcgtcgatctctgctcctcct |
234 |
Q |
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| T |
37089594 |
ttgaagcgactgaatctgctcaaaactcagccgccaccatcgttaatctctgctcttcct |
37089535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 20799 - 20875
Alignment:
| Q |
52 |
tgtctaagagtaacaccttttaagaaaccacatgacaacaccacttcaacgccaccgccgaaggcaccaccacacaa |
128 |
Q |
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| T |
20799 |
tgtctacgagtagcacctcttaagcaaccatacatcaacaccacttcagcgccaccgtccagggcaccaccacacaa |
20875 |
T |
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