View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_57 (Length: 239)
Name: NF12929_low_57
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26010599 - 26010382
Alignment:
| Q |
1 |
tatttttgatattctattattaaataatatgaagaagnnnnnnntatatagctagtgtagatcgatctataggctagcacttgaaggacttcctaagctt |
100 |
Q |
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| T |
26010599 |
tatttttgatattctattattaaataatatgaagaagaaaa----aaatagctagtgtagatcgatctataggctagcacttgaaggacttcctaagctt |
26010504 |
T |
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| Q |
101 |
acacttaactgggagttctagggcaagtttaggatcaataccataataagaaagcaatattgaattcttgtaacgacagaaacattcaagatcagccttg |
200 |
Q |
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| T |
26010503 |
acacttaactgggagttctagggcaagtttaggatcaataccataataagaaagtaatattgaattcttgtaacgacagaaacattcaagatcagccttg |
26010404 |
T |
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| Q |
201 |
gccataacagaacaacatgctt |
222 |
Q |
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| T |
26010403 |
gccataacagaacaacatgctt |
26010382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 26003286 - 26003158
Alignment:
| Q |
74 |
ctagcacttgaaggacttcctaagcttacacttaactgggagttctagggcaagtttaggatcaataccataataagaaagcaatattgaattcttgtaa |
173 |
Q |
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| T |
26003286 |
ctagcagttgaaggagtccacaagcttacacttaactgggagatccatggcttgatctggatcaataccatagaaagaaagcaaccctgaatccttgtaa |
26003187 |
T |
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| Q |
174 |
cgacagaaacattcaagatcagccttggc |
202 |
Q |
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| T |
26003186 |
ctacaaagacattcaagatcagccttggc |
26003158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 26019126 - 26019042
Alignment:
| Q |
94 |
taagcttacacttaactgggagttctagggcaagtttaggatcaataccataataagaaagcaatattgaattcttgtaacgaca |
178 |
Q |
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| T |
26019126 |
taagcttacagttaacaggaagttccatggcttggttaggatcaataccatagaaagaaagcaatcctgaatccttataacgaca |
26019042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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