View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_6 (Length: 630)
Name: NF12929_low_6
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Original strand, 1635439 - 1636065
Alignment:
| Q |
18 |
ttaacaaataaactcatttgtggtaactaaatatatattattggggttgccaaaactacaccatagagaaggcagaggcatagcttcgcccttgcatgat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
1635439 |
ttaacaaataaactcatttgtggtaactaaatatatattattggggttgccaaaactacaccatggagaaggaagaggcatagcttcgcccttgcatgat |
1635538 |
T |
|
| Q |
118 |
aatacgatctcaatttggttagttgggccaaaattgctagacctaaagtttgggggaggtcttggtgtccaaacaactagagactctaatatttctctta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1635539 |
aatacgatctcaatttggttagttgggccaaaattgctagacctaaagtttgggggaggtcttggtgtccaaacaactagagactctaatatttctctta |
1635638 |
T |
|
| Q |
218 |
ttgagaaacttatttgggatctacttcaaggaaacaacaagttttgggtcaacattttgtctcacaagtacgcatcagtttcttgtatcctctcccacat |
317 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1635639 |
ttgagaaacttatttgggatctacttcaagggaacaacaagttttgggtcaacattttgtctcacaagtacgcatcagtttcttgtatcctctcccacat |
1635738 |
T |
|
| Q |
318 |
catcattatctcttaccccttctatatgaaattccactattaaagctaagaatgttctcaaagacggtttatcttggtgtgaaggttcttgaaatttcct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1635739 |
catcattatctcttaccccttctatatgaaattccactattaaagctaagaatgttctcaaagacggtttatcttggtgtgaaggttcttgaaatttcct |
1635838 |
T |
|
| Q |
418 |
ttttgctttttgttcctttaacattgtnnnnnnncggcatttttattttattttgtaaaaccaatgtttt-------------------tgatataaata |
498 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1635839 |
ttttgctttttgttcctttaacattgtaaaaaaacggcatttttattttattttgtaaaaccaatgtttttgatataaatattaataaatgatataaata |
1635938 |
T |
|
| Q |
499 |
tttggtttccaagaatttaggaaaaaatagaaagaaaaaccctaataagtcctattgttttgtttgtggatcattcactctcgctcagtgactctttgat |
598 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
1635939 |
tttggtttccaagaatttaggaaaaaatagaaagaaaaatcctaataagtcctattgttttgtttgtcgatcattcactctcgctcagtgactctttgat |
1636038 |
T |
|
| Q |
599 |
ttgtccacactctttttctctgctcct |
625 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
1636039 |
ttgtccacactctttttctcggctcct |
1636065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 29672268 - 29672314
Alignment:
| Q |
18 |
ttaacaaataaactcatttgtggtaactaaatatatattattggggt |
64 |
Q |
| |
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||||||||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
29672268 |
ttaacaaataaactcatttgtggtagcataatatatattattggggt |
29672314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 20850885 - 20850846
Alignment:
| Q |
21 |
acaaataaactcatttgtggtaactaaatatatattattg |
60 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
20850885 |
acaaataaattcattggtggtaactaaatatatattattg |
20850846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 30252153 - 30252114
Alignment:
| Q |
20 |
aacaaataaactcatttgtggtaactaaatatatattatt |
59 |
Q |
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||||||||||||||||||| |||||||||||||| ||||| |
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| T |
30252153 |
aacaaataaactcatttgtagtaactaaatatatgttatt |
30252114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 5033596 - 5033553
Alignment:
| Q |
21 |
acaaataaactcatttgtggtaactaaatatatattattggggt |
64 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
5033596 |
acaaataaactcatttgtggtatttaaatatatattattggggt |
5033553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 43487277 - 43487317
Alignment:
| Q |
21 |
acaaataaactcatttgtggtaactaaatatatattattgg |
61 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||||| |
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| T |
43487277 |
acaaataatctcatttgtggtagctaaatatatattattgg |
43487317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 39909845 - 39909808
Alignment:
| Q |
21 |
acaaataaactcatttgtggtaactaaatatatattat |
58 |
Q |
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|||||||||||||||||| |||||||| |||||||||| |
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| T |
39909845 |
acaaataaactcatttgtagtaactaattatatattat |
39909808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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