View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_61 (Length: 229)
Name: NF12929_low_61
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 28288127 - 28288340
Alignment:
| Q |
1 |
tcaccacaactagccaaacaagttttacatgaaaattctcaaatcttctcaaatagaactgtcccacatgcagtacatgcacttgatcataacaaattct |
100 |
Q |
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| T |
28288127 |
tcaccacaattagccaaacaagttttacatgaaaattctcaaatcttctcaaatagaactgtcccacatgcaatacatgcacttgatcataacaaattct |
28288226 |
T |
|
| Q |
101 |
cacttgggtggcttccaacattagctttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28288227 |
cacttgggtggcttccaacattagctttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaacat |
28288326 |
T |
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| Q |
201 |
tcgccaacaaaagt |
214 |
Q |
| |
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|||||||||||||| |
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| T |
28288327 |
tcgccaacaaaagt |
28288340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 28321145 - 28320935
Alignment:
| Q |
4 |
ccacaactagccaaacaagttttacatgaaaattctcaaatcttctcaaatagaactgtcccacatgcagtacatgcacttgatcataacaaattctcac |
103 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | |||| |||||||| ||||||||||| |
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| T |
28321145 |
ccacaagtagccaaacaagttttacatgacaattctcaaatcttttcaaatagaactgtcccacatgcaatctctgcagttgatcatgacaaattctcag |
28321046 |
T |
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| Q |
104 |
ttgggtggcttccaacattagctttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaacattcg |
203 |
Q |
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| T |
28321045 |
ttgggtgggttccaacattaaatttgtggaagaaactaaggaaaagttgtgctacaaaagtattttctacaaaaatgcttgactcaacaagaaaccttcg |
28320946 |
T |
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| Q |
204 |
ccaacaaaagt |
214 |
Q |
| |
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||||||||||| |
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| T |
28320945 |
ccaacaaaagt |
28320935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 28310574 - 28310361
Alignment:
| Q |
1 |
tcaccacaactagccaaacaagttttacatgaaaattctcaaatcttctcaaatagaactgtcccacatgcagtacatgcacttgatcataacaaattct |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||| | |
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| T |
28310574 |
tcacctcaactagccaaacaagttttacatgaaaattctcaaatcttctctaatagaactgtcccacatgcactttgtgcacttgatcatgacaaattat |
28310475 |
T |
|
| Q |
101 |
cacttgggtggcttccaacattagctttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaacat |
200 |
Q |
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|| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| | | |
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| T |
28310474 |
caattgggatgcttccaacattagcttcatggaagaaactaaggaaattttgtgctacaaaagtattttctacaaaagtacttgactcaacaaaaatcct |
28310375 |
T |
|
| Q |
201 |
tcgccaacaaaagt |
214 |
Q |
| |
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|||||||||||||| |
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| T |
28310374 |
tcgccaacaaaagt |
28310361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 28297083 - 28296873
Alignment:
| Q |
4 |
ccacaactagccaaacaagttttacatgaaaattctcaaatcttctcaaatagaactgtcccacatgcagtacatgcacttgatcataacaaattctcac |
103 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||| | |||| |||||||| ||||||||||| |
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| T |
28297083 |
ccacaagtagccaaacaagccttacatgaaaattcccaaatcttctctaatagaactgttccacatgcacttagtgcagttgatcatgacaaattctcaa |
28296984 |
T |
|
| Q |
104 |
ttgggtggcttccaacattagctttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaacattcg |
203 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||| |||| |
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| T |
28296983 |
ttgggtggcttccaacattagctttatggaagaaactaaggaaaagttgtgccacaaatgtattttctaaaaaaatgcttgactcaacaaaaaaccttcg |
28296884 |
T |
|
| Q |
204 |
ccaacaaaagt |
214 |
Q |
| |
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||||||||||| |
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| T |
28296883 |
ccaacaaaagt |
28296873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 28331627 - 28331414
Alignment:
| Q |
1 |
tcaccacaactagccaaacaagttttacatgaaaattctcaaatcttctcaaatagaactgtcccacatgcagtacatgcacttgatcataacaaattct |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| ||||| ||||| |||||| ||| | ||||| | ||||||||||||| ||||||||| |
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| T |
28331627 |
tcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtagtctcggatgcaatttgtgcacttgatcatcacaaattct |
28331528 |
T |
|
| Q |
101 |
cacttgggtggcttccaacattagctttgtggaagaaactaaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaacat |
200 |
Q |
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|| | || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |
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| T |
28331527 |
caataggaacacttccaacattagctttgtggaagaaactaaggaaaatttgtgctacacaagtattttctacaaaaatgcttgactcaacaaaaatcct |
28331428 |
T |
|
| Q |
201 |
tcgccaacaaaagt |
214 |
Q |
| |
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||| |||||||||| |
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|
| T |
28331427 |
tcgtcaacaaaagt |
28331414 |
T |
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