View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12929_low_63 (Length: 229)
Name: NF12929_low_63
Description: NF12929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12929_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 10729345 - 10729244
Alignment:
| Q |
36 |
ttcttacataattaagttttgattcaataacatgcatcatatctcttcaagaaaatatt-ttttaaaaaatggatcatgatcaaaactattgccaaagaa |
134 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
10729345 |
ttcttacataattaagttttgattcattaacatacatcatatctcttcaagaaaatattttttttaaaaatggatcatgatcaaaactattgccaaagaa |
10729246 |
T |
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| Q |
135 |
gc |
136 |
Q |
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|| |
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| T |
10729245 |
gc |
10729244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 10729212 - 10729149
Alignment:
| Q |
146 |
tatatgcaattttgaaccaaacattcagaaacaaacaaaaactatacaaactgaaagcccacat |
209 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10729212 |
tatatacaattttgaacctcacattcagaaacaaacaaaaactatacaaaccgaaagcccacat |
10729149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 10732665 - 10732531
Alignment:
| Q |
70 |
catcatatctcttcaagaaaatattttttaaaaaatggatcatgatcaaaactattgccaaagaagcnnnnnnnnttatatgcaattttgaaccaaacat |
169 |
Q |
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| T |
10732665 |
catcatatctcttcaagaaaatattaa--aaaaaattgatcatgatcaaaactaatgcccaaaaagcaaaag---ttatatgctattttgagcctcacat |
10732571 |
T |
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| Q |
170 |
tcagaaacaaacaaaaactatacaaactgaaagcccacat |
209 |
Q |
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| T |
10732570 |
tcagagacaaacaaaaacaatacaaattggaagcccacat |
10732531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 10729706 - 10729642
Alignment:
| Q |
145 |
ttatatgcaattttgaaccaaacattcagaaacaaacaaaaactatacaaactgaaagcccacat |
209 |
Q |
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|||||||||||||||| || |||||||||||||||||||||| || |||| || |||||||||| |
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| T |
10729706 |
ttatatgcaattttgatcctcacattcagaaacaaacaaaaacaatgcaaattggaagcccacat |
10729642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 10727036 - 10726967
Alignment:
| Q |
145 |
ttatatgcaattttgaaccaaacattcagaaacaaacaaaaactatacaaactgaaagcccacattacct |
214 |
Q |
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|||||||||||||||| || |||||||||||||||||||| ||||||| || |||| ||||| |||| |
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| T |
10727036 |
ttatatgcaattttgagcctcacattcagaaacaaacaaaataaatacaaattggaagctcacatcacct |
10726967 |
T |
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